CHANGELOG.md

Change Log

release-2023.03.20 (2023/03/20 16:39 +00:00)

• #2247 Pre-release 2023.03.20 (#2247) (@tardis-bot)
• #2246 Fix team reviewers on workflows (#2246) (@epassaro)
• #2237 MonteCarlo packet progress bar completes to 100% (#2237) (@shreyas3156)
• #2243 Fix for release dates (#2243) (@epassaro)
• #2242 Fix for automerge (#2242) (@epassaro)
• #2236 Docs Fix: Download Atom Data in rpacket_tracking.ipynb (#2236) (@atharva-2001)
• #2204 Add docstrings to subpackages (#2204) (@PommesFrittes)
• #2223 Post-release 2023.02.27 (#2223) (@tardis-bot)

release-2023.02.27 (2023/02/27 13:53 +00:00)

• #2222 Pre-release 2023.02.26 (#2222) (@tardis-bot)
• #2214 Correct the description of 'no_of_packets' in Monte Carlo Configuration (#2214) (@1e9abhi1e10)
• #2213 Post-release 2023.02.20 (#2213) (@tardis-bot)
• #2194 Cache LFS objects in the tests workflow (#2194) (@atharva-2001)

release-2023.02.2 (2023/02/20 15:04 +00:00)

• #2211 Pre-release 2023.02.19 (#2211) (@tardis-bot)
• #2210 Post-release 2023.02.16 (#2210) (@tardis-bot)

release-2023.02.16 (2023/02/16 14:18 +00:00)

• #2208 Pre-release 2023.02.12 (#2208) (@tardis-bot)
• #2190 Add version tag to simulation objects (#2190) (@kimsina)
• #2206 Post-release 2023.02.06 (#2206) (@tardis-bot)

release-2023.02.06 (2023/02/06 15:00 +00:00)

• #2205 Pre-release 2023.02.05 (#2205) (@tardis-bot)
• #2200 Fix config reader tests (#2200) (@chvogl)
• #2195 Reading nlte_excitation_species from config (#2195) (@sonachitchyan)
• #2198 Fixing test_store_runner_to_hdf (#2198) (@sonachitchyan)
• #2185 Rename T variables to temperature (#2185) (@1e9abhi1e10)
• #2171 Adding nlte solver (#2171) (@sonachitchyan)
• #2187 Downloading nlte_atom_data in ref data (#2187) (@sonachitchyan)
• #2188 Post-release 2023.01.11 (#2188) (@tardis-bot)

release-2023.01.11 (2023/01/11 16:25 +00:00)

• #2186 Pre-release 2023.01.08 (#2186) (@tardis-bot)
• #2182 Post-release 2022.12.26 (#2182) (@tardis-bot)

release-2022.12.26 (2022/12/26 14:51 +00:00)

• #2180 Pre-release 2022.12.25 (#2180) (@tardis-bot)
• #2170 Add missing init.py files to transport and geometry subpackages (#2170) (@epassaro)
• #2173 Post-release 2022.12.12 (#2173) (@tardis-bot)

release-2022.12.12 (2022/12/12 15:02 +00:00)

• #2172 Pre-release 2022.12.11 (#2172) (@tardis-bot)
• #2150 Kilonova missing zeta (#2150) (@gleck97)
• #2158 NLTE jacobian matrix (#2158) (@sonachitchyan)
• #2154 Fixing typos for nlte ion (#2154) (@sonachitchyan)
• #2159 Fix relativistic packet initialization (#2159) (@chvogl)

release-2022.11.21 (2022/11/21 15:15 +00:00)

• #2160 Pre-release 2022.11.20 (#2160) (@tardis-bot)
• #2156 Post-release 2022.11.17 (#2156) (@tardis-bot)

release-2022.11.17 (2022/11/17 18:45 +00:00)

• #2155 Pre-release 2022.11.17 (#2155) (@tardis-bot)
• #2152 Set specific qgrid feedstock version (#2152) (@andrewfullard)
• #2140 Adding nlte_rate_equation_solver.py (#2140) (@sonachitchyan)
• #2147 Pin setuptools_scm to v6 (#2147) (@epassaro)
• #2127 Possible fix for prerelease workflow (#2127) (@andrewfullard)
• #2146 Add missing cell to download atom data (#2146) (@epassaro)
• #2136 Restructuring NumbaModel (#2136) (@code-explorer)
• #2132 Adding rate matrix index (#2132) (@sonachitchyan)
• #2130 moved helium nlte to a seperate file helium_nlte.py (#2130) (@sonachitchyan)
• #2124 Cleaning model state (#2124) (@code-explorer)
• #2096 Small bug fix for He NLTE. (#2096) (@aoife-boyle)
• #1923 Fixing latex_label Parameter within write_to_tex function (#1923) (@bartnikm)
• #2095 Removing outdated documentation and creating developer tools section (#2095) (@smithis7)
• #2099 Arbitrary isotope decay handling and positronium (#2099) (@andrewfullard)
• #2118 Integrating experimental model state (#2118) (@code-explorer)
• #2120 Update arepo docs notebook to be pre-run (#2120) (@AlexHls)
• #2115 added docs for montecarlo packet visualization (#2115) (@jayantbhakar)
• #2117 Runs cells in arepo notebook to avoid downloading files (#2117) (@andrewfullard)
• #2103 New geometry class (#2103) (@code-explorer)
• #2111 New TARDIS flowchart and cleaning up physics walkthrough (#2111) (@smithis7)
• #2098 New Composition Class (#2098) (@code-explorer)
• #2108 Rework Estimators and Convergence Docs (#2108) (@smithis7)
• #2105 Documentation for Features In-Progress (#2105) (@smithis7)
• #2107 Added positronium notes (#2107) (@andrewfullard)
• #2091 Added interaction type in rpacket_tracker (#2091) (@jayantbhakar)
• #2110 removed scatter function from interaction.py (#2110) (@sonachitchyan)
• #2106 Resturcture ABCs import from collections module (#2106) (@rohithvarma3000)
• #2093 Fixing Docs Warnings (#2093) (@smithis7)
• #2073 rpacket_tracker returns dataframe (#2073) (@jayantbhakar)
• #2104 Re-produced PR 1826 (#2104) (@andrewfullard)
• #2097 Creating new docs building instructions (#2097) (@smithis7)
• #2088 Arepo docs fix (#2088) (@AlexHls)
• #1941 Improved arepo parser (#1941) (@AlexHls)
• #2026 Adding physics introduction to documentation (#2026) (@smithis7)
• #2084 Fix broken links in workflow files and goverance md (#2084) (@rohithvarma3000)
• #2083 Moved trace_packet to tardis tansport (#2083) (@Rodot-)
• #2082 Added documetation on how to compare environment before update (#2082) (@jaladh-singhal)
• #2076 Modified Function Name in Config validator according to PEP8 (#2076) (@rohithvarma3000)
• #2062 Remove yaml_load_config_file (#2062) (@aman1971)
• #2052 Created a smart HDF Reader which can re-produce simulation object (#2052) (@code-explorer)
• #2070 Pre-release 2022.06.26 (#2070) (@tardis-bot)
• #2069 Wait for pull request creation (#2069) (@epassaro)
• #2067 Begin geometry subfolder (#2067) (@nolanbrown01)
• #2050 Update Jsonschema package to V4 (#2050) (@rohithvarma3000)
• #2065 Continuing geometry restructure (#2065) (@nolanbrown01)
• #2063 Initial geometry restructure (#2063) (@nolanbrown01)
• #2061 Post-release 2022.06.19 (#2061) (@tardis-bot)

release-2022.06.19 (2022/06/19 02:25 +00:00)

• #2060 Pre-release 2022.06.19 (#2060) (@tardis-bot)
• #2036 Restructure code to remove the single_packet_seed field (#2036) (@rohithvarma3000)
• #2054 Auto-merge fixes (#2054) (@epassaro)
• #2053 Change developer installation command (#2053) (@epassaro)
• #2048 Disable profiling page build on pull requests (#2048) (@epassaro)
• #2042 Polish up Quickstart guide (#2042) (@epassaro)
• #2010 Enable automerge on pre and post-release workflows (#2010) (@epassaro)
• #2046 Stop redirecting docs page (#2046) (@epassaro)
• #2045 Add DOI badge to credits section (#2045) (@epassaro)
• #2047 Ignore gamma-ray deposition notebook for now (#2047) (@andrewfullard)
• #1698 Gamma ray propagation (#1698) (@andrewfullard)
• #2044 Post-release 2022.06.05 (#2044) (@tardis-bot)

release-2022.06.05 (2022/06/05 01:07 +00:00)

• #2043 Pre-release 2022.06.05 (#2043) (@tardis-bot)
• #2039 Check PEP8 on CI (#2039) (@epassaro)
• #2037 Update README.rst in post-release (#2037) (@epassaro)
• #2024 Added v_inner and v_outer, enable_nonhomologous_expansion for future use in nonhomologous expansion (#2024) (@sonachitchyan)
• #2038 Fix bot aliases in .mailmap (#2038) (@epassaro)
• #2027 Replace docstr-coverage with interrogate (#2027) (@epassaro)
• #2020 Fixes for CITATION.cff (#2020) (@epassaro)
• #2033 Merge all CI users on mailmap (#2033) (@epassaro)
• #2028 Rebuild installation page (#2028) (@epassaro)
• #1921 Formal integral documentation (#1921) (@smithis7)
• #2030 Fix estimators parallel (#2030) (@Rodot-)
• #2019 Added compatability to current version of carsus atomic data (#2019) (@Rodot-)
• #2011 Build and cache conda environments with lockfiles (#2011) (@epassaro)
• #1991 Re-write download_from_url using Astropy's download_file (#1991) (@epassaro)
• #1992 Fix low temperature problem of Van Regemorter approximation (#1992) (@chvogl)
• #2018 Automated changes for post-release 2022.05.08 (#2018) (@tardis-bot)

release-2022.05.08 (2022/05/08 00:27 +00:00)

• #2016 Automated changes for pre-release 2022.05.08 (#2016) (@tardis-bot)
• #1996 Fixes for compare-refdata pipeline (#1996) (@epassaro)
• #2012 Supply base input to the create pull request action (#2012) (@epassaro)
• #2007 [fix] Use pull_request_target trigger in release workflow (#2007) (@epassaro)
• #2008 Move link_t_rad_t_electron to config file (@sonachitchyan)
• #1957 Revert "Removing Levels Index Variable Within Atomic Data Preperation (#1957)" (#2009) (@Rodot-)
• #2006 Automated changes for post-release 2022.05.04 (#2006) (@tardis-bot)

release-2022.05.04 (2022/05/04 16:35 +00:00)

• #2005 Automated changes for pre-release 2022.05.04 (#2005) (@tardis-bot)
• #2003 Fix for isotope abundance parsing (#2003) (@Rodot-)
• #1995 Force constant version date length (#1995) (@epassaro)
• #1999 Create TARDIS release workflow (#1999) (@epassaro)
• #2001 Post-release workflow (#2001) (@epassaro)
• #2000 Update build-docs.yml (#2000) (@smithis7)
• #1998 Fix concurrency groups in workflows (#1998) (@epassaro)
• #1987 Better documentation build workflow from 2021 GA Hackathon (#1987) (@epassaro)
• #1989 Pre-release workflow (#1989) (@epassaro)
• #1988 Use Azure mirror for reference data in testing pipeline (#1988) (@epassaro)
• #1978 Plasma number densities using isotopes (#1978) (@andrewfullard)
• #1985 Migrate testing pipeline to GitHub Actions (#1985) (@epassaro)
• #1981 Better docstring coverage workflow from 2021 GA Hackathon (#1981) (@epassaro)
• #1980 Check Black format on master branch (#1980) (@epassaro)
• #1982 Add bot comment with directions to update .mailmap (#1982) (@epassaro)
• #1973 deploy environment with spec file; add aliases to mailmap (#1973) (@epassaro)
• #1983 Remove files already superseded by templates (#1983) (@epassaro)
• #1977 Ignore more Black commits (#1977) (@epassaro)
• #1971 Blackify TARDIS again (#1971) (@epassaro)
• #1974 Add disclaimer to environment file regarding conda-forge recipe (#1974) (@epassaro)
• #1970 Remove pull request bot comment workflow (#1970) (@epassaro)
• #1969 Fix docs build after upgrading conda environment (#1969) (@wkerzendorf)

release-2022.4.24 (2022/04/22 00:19 +00:00)

• #1933 Intensity p rays (#1933) (@Rodot-)
• #1948 Update TARDIS environment after replacing PyNE (#1948) (@epassaro)
• #1957 Removing Levels Index Variable Within Atomic Data Preperation (#1957) (@bartnikm)
• #1968 fixed index type in Saha solver documentation (#1968) (@afloers)
• #1959 disable mamba on azure pipelines (#1959) (@epassaro)
• #1967 Logging/csvy parsers errors (#1967) (@wkerzendorf)
• #1813 Replacing PyNE with radioactivedecay for radionuclide decay calculations (#1813) (@lemointm)

release-2022.4.1 (2022/04/07 14:38 +00:00)

• #1925 Plasma Graph Tutorial (#1925) (@bartnikm)

release-2022.4.3 (2022/03/28 14:30 +00:00)

• #1899 Filtering Levels Parameter within Plasma Calculations (#1899) (@bartnikm)
• #1920 Estimators and Convergence Documentation (#1920) (@smithis7)
• #1938 Pin Jinja version (#1938) (@smithis7)

release-2022.3.27 (2022/03/23 15:51 +00:00)

• #1928 Fixing various physics documentation issues (#1928) (@smithis7)

release-2022.3.2 (2022/03/14 15:16 +00:00)

• #1898 making changes to estimators (#1898) (@smithis7)

release-2022.3.13 (2022/03/10 15:35 +00:00)

• #1922 Fixing documentation links and misc. API documentation fixes (#1922) (@smithis7)

release-2022.3.6 (2022/03/03 19:21 +00:00)

• #1919 GPU Options (#1919) (@KevinCawley)
• #1918 Fix documentation build failure due to PR #1823 (#1918) (@atharva-2001)
• #1917 Continuum Opacities (#1917) (@Rodot-)
• #1823 Disable Convergence Plots by default (#1823) (@atharva-2001)
• #1914 add continuum tracer (#1914) (@wkerzendorf)

release-2022.2.27 (2022/02/24 21:00 +00:00)

• #1886 Continuum branch [attempted merge with master] (#1886) (@wkerzendorf)
• #1907 Add note on GPU selection to formal integral (#1907) (@KevinCawley)
• #1710 Changed Formatting for the logger based on Log Level (#1710) (@DhruvSondhi)
• #1901 Fix PyTest fixtures and updated mainloop to properly compile (#1901) (@Rodot-)
• #1900 Make update-refdata pipeline open a PR instead of merging changes (#1900) (@epassaro)

release-2022.2.2 (2022/02/17 20:14 +00:00)

• #1837 CUDA Version of the Formal Integral (#1837) (@KevinCawley)
• #1891 Fixing Broken Latex Code (#1891) (@bartnikm)
• #1868 Fixing Plasma Graph to Allow .dot and .tex file Generation (#1868) (@bartnikm)
• #1893 Fixing small docs issues (#1893) (@smithis7)

release-2022.2.6 (2022/02/02 17:16 +00:00)

• #1888 Pin Black (#1888) (@atharva-2001)
• #1881 Changed to append seed & index values only once for a particular RPacketTracker instance (#1881) (@DhruvSondhi)

release-2022.1.3 (2022/01/29 13:59 +00:00)

• #1877 printing packet information (#1877) (@wkerzendorf)
• #1867 Arepo parser (#1867) (@AlexHls)
• #1843 Changed default Log level to INFO (#1843) (@DhruvSondhi)
• #1849 Interactive docs for models (#1849) (@smithis7)
• #1876 fixed pytest tardis command in documentation (#1876) (@afloers)
• #1874 move transport related parts to r_packet_transport (#1874) (@wkerzendorf)
• #1872 Fix links in the code of conduct (#1872) (@smithis7)
• #1847 Add a ModelState class (#1847) (@atharva-2001)

release-2022.1.23 (2022/01/21 16:50 +00:00)

• #1865 fixing links (#1865) (@smithis7)
• #1866 Refactor test_configuration_namespace.py (#1866) (@atharva-2001)
• #1861 Renamed RPacketCollection Class to RPacketTracker (#1861) (@DhruvSondhi)

release-2022.1.16 (2022/01/12 15:11 +00:00)

• #1827 Adding Explanations to Spectrum Configuration (#1827) (@bartnikm)
• #1752 Add tests to SDEC plotter module (#1752) (@jaladh-singhal)
• #1848 Switching progress bars page to rst (#1848) (@smithis7)

release-2022.1.9 (2022/01/06 15:59 +00:00)

• #1846 Fix Virtual Packet Logging Bug (#1846) (@atharva-2001)

release-2021.12.19 (2021/12/13 18:38 +00:00)

• #1834 Adding Luminosity Integral Explanation to Supernova Configuration (#1834) (@bartnikm)
• #1842 Fixed fstring issue from mixing quotes and reformatted files from fstring PR with black (#1842) (@Rodot-)
• #1841 Fixed the Failing Documentation for Tracking RPacket Feature (#1841) (@DhruvSondhi)

release-2021.12.12 (2021/12/10 17:30 +00:00)

• #1835 Reorganizing docs for website release (#1835) (@smithis7)
• #1748 Tracking RPacket Properties in Montecarlo Single Packet Loop Function (#1748) (@DhruvSondhi)
• #1706 Changed to fstring (#1706) (@svenkat19)
• #1833 Editing instructions for contributing to the documentation (#1833) (@smithis7)

release-2021.12.5 (2021/12/02 19:14 +00:00)

• #1832 Convert quantities to arrays when plotting in SDEC plot (#1832) (@atharva-2001)
• #1830 Name plotly traces in SDEC plot (#1830) (@atharva-2001)

release-2021.11.28 (2021/11/25 17:29 +00:00)

• #1825 changed all files to import constants from only tardis (#1825) (@shilpiprd)

release-2021.11.14 (2021/11/12 14:24 +00:00)

• #1799 Bug fixes and Improvements in Custom Abundance Widget (#1799) (@yuyizheng1112)
• #1803 Option to make docs build in parallel (#1803) (@smithis7)
• #1817 Fixing SDEC docs page (#1817) (@smithis7)

release-2021.10.31 (2021/10/27 19:00 +00:00)

• #1821 remove numexpr (#1821) (@wkerzendorf)
• #1788 Add cmap option to specify the colormap of abundance plot (#1788) (@yuyizheng1112)
• #1801 Cleaning up docs build (#1801) (@smithis7)
• #1808 Fix importing scipy.sparse.linalg for binder (#1808) (@smithis7)
• #1816 fix push job on update changelog workflow (#1816) (@epassaro)

release-2021.10.17 (2021/10/14 15:37 +00:00)

• #1811 Fixing broken documentation build (#1811) (@smithis7)
• #1744 Basic Spectrum Generation Interactive Documentation (#1744) (@smithis7)
• #1810 Add option to add Observed Spectrum (2) (#1810) (@atharva-2001)

release-2021.10.1 (2021/10/06 13:38 +00:00)

• #1806 Pin jsonschema to v3 (#1806) (@atharva-2001)
• #1761 Revert "Add option to add Observed Spectrum (#1761)" (#1805) (@jamesgillanders)
• #1761 Add option to add Observed Spectrum (#1761) (@atharva-2001)
• #1794 Change virtual spectrum spawn range start value to 1 (#1794) (@atharva-2001)

release-2021.9.26 (2021/09/24 21:20 +00:00)

• #1757 Auto-Generating Tutorials Page (#1757) (@smithis7)

release-2021.9.19 (2021/09/17 14:41 +00:00)

• #1784 Restructure Custom Abundance Widget code (#1784) (@yuyizheng1112)
• #1763 Making Changes to Several Tutorials (#1763) (@smithis7)

release-2021.9.12 (2021/09/09 11:18 +00:00)

• #1790 disable changelog in release pipeline (#1790) (@epassaro)
• #1769 Changed the way specific_log_level flag works in the Logging Configuration (#1769) (@DhruvSondhi)

release-2021.8.26 (2021/08/26 16:40 +00:00)

• #1789 add explicit jupyter dependency (#1789) (@epassaro)
• #1787 fix zenodo pipeline env (#1787) (@epassaro)
• #1786 fix for release task (#1786) (@epassaro)
• #1703 Adding Progress Bars (#1703) (@atharva-2001)
• #1775 orchestrating continuous delivery pipeline (#1775) (@epassaro)
• #1778 Fix hoverdata in plasma plots (#1778) (@atharva-2001)
• #1693 Enabling virtual_packet_logging by default in the visualization folder (#1693) (@atharva-2001)

release-2021.8.15.0 (2021/08/12 14:24 +00:00)

• #1770 Rename cplots to convergence_plots (#1770) (@atharva-2001)
• #1772 Reverse legend in Plasma Convergence Plots (#1772) (@atharva-2001)

release-2021.8.8.0 (2021/08/05 18:49 +00:00)

• #1768 Renamed specific log flag to specific_log_level (#1768) (@DhruvSondhi)
• #1721 Restructure Model Configuration Documentation (#1721) (@smithis7)

release-2021.8.1.0 (2021/07/29 18:57 +00:00)

• #1753 Adding Convergence Plots to the Documentation (#1753) (@atharva-2001)
• #1738 TARDIS Grid (#1738) (@marxwillia)
• #1755 changing note format (#1755) (@smithis7)
• #1740 Renamed montecarlo_logger.py to montecarlo_tracking.py (#1740) (@DhruvSondhi)
• #1697 Interact Button in Documentation (#1697) (@smithis7)
• #1636 Adding Convergence Plots (#1636) (@atharva-2001)
• #1723 Edit docstring in run_tardis (#1723) (@atharva-2001)
• #1743 Fix for Unresponsive Main Page due to Twitter Widget (#1743) (@atharva-2001)
• #1746 Fix docs build [build docs] (#1746) (@smithis7)
• #1730 Renamed log_state to log_level (#1730) (@DhruvSondhi)
• #1736 Fixing Doc Build Warnings (#1736) (@smithis7)
• #1737 Add Jaladh to mailmap (#1737) (@jaladh-singhal)
• #1739 Fixed IPython Displaying the Plasma Stratification (Table) even when the Logger is turned Off (#1739) (@DhruvSondhi)
• #1742 Reduce damping_constant under t_inner for tardis_example.yml (#1742) (@atharva-2001)
• #1665 Demonstrating the nelements and the species_list functionality in the SDEC plot notebook (@atharva-2001)
• #1727 Fixing Quickstart Metadata (#1727) (@smithis7)
• #1726 display "latest" in doc version (#1726) (@epassaro)
• #1716 Small fixes to docs (#1716) (@smithis7)
• #1722 Added missing import for IonNumberDensityHeNLTE (#1722) (@DhruvSondhi)
• #1714 Removed Formatting from exisiting log messages (#1714) (@DhruvSondhi)
• #1707 Open in VSCode badge (#1707) (@wkerzendorf)
• #1713 fix package data for conda-forge package (#1713) (@epassaro)
• #1711 Changed the xlim and the ylabel in the quickstart notebook plot (#1711) (@Rodot-)
• #1686 fix pip install (#1686) (@epassaro)
• #1701 Adding Logging Support for Caught Exceptions (#1701) (@DhruvSondhi)
• #1684 Moved Simulation & Montecarlo Logging Frameworks to tardis/io/logger folder (#1684) (@DhruvSondhi)
• #1691 Create profiling documentation directory (#1691) (@KevinCawley)
• #1680 Added docstring-coverage badge (#1680) (@epassaro)
• #1696 Adding mu and r to virtual packet logging (#1696) (@smithis7)
• #1695 Enabling spectrum plotting in the frequency domain (#1695) (@smithis7)
• #1688 final changes for release pipeline (#1688) (@epassaro)
• #1683 prepare release pipeline for CalVer (#1683) (@epassaro)
• #1674 APE 17 migration (#1674) (@epassaro)
• #1658 add refdata repo selection in template (#1658) (@epassaro)
• #1682 Opacities script with proper credit (#1682) (@andrewfullard)
• #1580 Revert "Port tardis_opacities script from tardisanalysis (#1580)" (#1677) (@andrewfullard)
• #1660 Small fixes to I/O documentation (#1660) (@smithis7)
• #1678 Enabling Repository on Binder (#1678) (@smithis7)
• #1679 Formatted files with Black (#1679) (@DhruvSondhi)
• #1633 Implementing Logging Configuration for Notebook Logging (#1633) (@DhruvSondhi)
• #1642 Adding Glossary (#1642) (@J-Je0ng)
• #1580 Port tardis_opacities script from tardisanalysis (#1580) (@MarkMageeAstro)

v3.0.dev4019 (2021/06/25 16:09 +00:00)

• #1664 Use conda-forge packages instead of pypi (#1664) (@epassaro)
• #1667 Moving Profiling Page (#1667) (@smithis7)
• #1659 Restructure Documentation pt. 2 (#1659) (@smithis7)
• #1656 Editing sponsors and credits pages of documentation (#1656) (@smithis7)
• #1597 Added value error to ensure active virtual packet logging in SDECPlotter (#1597) (@yuyizheng1112)
• #1630 Fix FileExistsError in to_hdf() (#1630) (@yuyizheng1112)
• #1641 Editing Installation Page (#1641) (@musabbihaz)
• #1657 Add SnakeViz profiling example (#1657) (@KevinCawley)

v3.0.dev4010 (2021/06/18 21:22 +00:00)

• #1644 add mailmap check workflow (#1644) (@epassaro)
• #1589 Adding Interactive Initialization Documentation (#1589) (@smithis7)
• #1627 Correct misspelling in sdec_plot (#1627) (@yuyizheng1112)
• #1632 Formatting Logging Output for Simulation (#1632) (@DhruvSondhi)
• #1652 Changes to tardis environment (#1652) (@epassaro)
• #1650 Added functionality to detect running environment for simulations (#1650) (@DhruvSondhi)
• #1615 Added flag to disable notebook rendering in Sphinx (#1615) (@epassaro)
• #1651 force orphan gh-pages branch (#1651) (@epassaro)
• #1643 Restructure Documentation (#1643) (@smithis7)
• #1647 Added fix for the packet logging while parallelism is enbaled. The vpacket collections are cached at the start of the loop and data is extracted afterwards (#1647) (@Rodot-)
• #1645 Configured codecov (#1645) (@epassaro)
• #1586 Added GitHub pages instructions (#1586) (@epassaro)

v3.0.dev3998 (2021/06/14 14:52 +00:00)

• #1648 Fixed compareWith parameter in release pipeline (#1648) (@epassaro)
• #1609 update refdata procedure docs (#1609) (@epassaro)
• #1635 Run tests before making a new release (#1635) (@epassaro)
• #1617 Fixing docstrings & indentation related warnings for Sphinx (#1617) (@DhruvSondhi)
• #1565 Fix for close line test. (#1565) (@Rodot-)
• #1639 push montecarlo data (#1639) (@epassaro)
• #1595 move zenodo pipeline to GA (#1595) (@epassaro)
• #1623 force pyne nomoab_openmc version (#1623) (@epassaro)
• #1622 Adding GitHub to sponsors page (#1622) (@smithis7)
• #1631 update mailmap and orcid (#1631) (@epassaro)
• #1619 disable repeat on pr comment (#1619) (@epassaro)

v3.0.dev3983 (2021/06/04 16:50 +00:00)

• #1555 Replacing the contents of the news section with TARDIS twitter feed (#1555) (@atharva-2001)
• #1610 add token at checkout step (#1610) (@epassaro)
• #1594 Fixing JSON Schema not Rendering Properly in the Documentation (#1594) (@DhruvSondhi)
• #1607 SDEC Visibility Fix (#1607) (@atharva-2001)
• #1603 change bot email (#1603) (@epassaro)
• #1601 fixing doc build (#1601) (@smithis7)
• #1602 add fetch depth param to changelog workflow (#1602) (@epassaro)
• #1588 Added PR review checklist workflow (#1588) (@aribalam)
• #1592 Flexible packet initial radius (#1592) (@andrewfullard)
• #1598 Resolving warnings in ADS notebook (#1598) (@smithis7)
• #1596 Fixing bibliography in documentation build (#1596) (@smithis7)
• #1590 Fixing inconsistencies for rst formatting in Docs (Second Iteration) (#1590) (@DhruvSondhi)

v3.0.dev3970 (2021/05/28 21:43 +00:00)

• #1570 add fetch depth param to Azure template (#1570) (@epassaro)
• #1567 review environment file (#1567) (@epassaro)
• #1584 Making sponsors page of documentation (#1584) (@smithis7)
• #1577 Fixing issues with Citations & Label references in Docs (@DhruvSondhi)
• #1581 changes to badges (@epassaro)

v3.0.dev3959 (2021/05/21 18:44 +00:00)

• #1582 Fixing Team Link redirection in Code Of Conduct (@DhruvSondhi)

v3.0.dev3957 (2021/05/20 19:27 +00:00)

• #1571 Fix numba deprecation (#1571) (@KevinCawley)
• #1578 minor changes to compare refdata pipeline (#1578) (@epassaro)
• #1557 Changed Quickstart Example according to #1477 (#1557) (@aribalam)
• #1575 Fixing virtual_packet_logging instructions for line info widget (#1575) (@DhruvSondhi)
• #1551 Revert "Adding Instructions for enabling virtual_packet_logging (#1551)" (#1574) (@jaladh-singhal)

v3.0.dev3952 (2021/05/14 17:44 +00:00)

• #1559 Added support for passing Configuration object in run_tardis (#1559) (@aribalam)
• #1553 Fixing Config Validator rst formatting (#1553) (@DhruvSondhi)
• #1551 Adding Instructions for enabling virtual_packet_logging (#1551) (@DhruvSondhi)
• #1528 Revising "Packet Propagation" page of physics docs (#1528) (@smithis7)
• #1569 [build docs] fixing build problem (#1569) (@smithis7)

v3.0.dev3947 (2021/05/12 20:42 +00:00)

• #1566 better handling of pickle5 backport (#1566) (@epassaro)
• #1562 added symlinks for tardis_example.yml (#1562) (@parikshit14)

v3.0.dev3945 (2021/05/05 14:03 +00:00)

• #1434 create update refdata pipeline (#1434) (@epassaro)
• #1554 Adding Config Value Validation for Different Parameters via Config File (#1554) (@DhruvSondhi)
• #1549 Numba formal integral (#1549) (@Rodot-)
• #1546 resolves issue #1370 bad YAML Output (#1546) (@atharva-2001)
• #1543 Restructuring r_packet.py (#1543) (@andrewfullard)
• #1539 Add ion contributions to SDEC plotter (#1539) (@MarkMageeAstro)
• #1531 Fix issue 1485 SDEC label bugs (#1531) (@atharva-2001)
• #1493 Added workflow for Documentation preview generation (#1493) (@aribalam)
• #1540 fix version number displayed in docs (#1540) (@epassaro)
• #1538 clean template files (#1538) (@epassaro)
• #1512 Change the default number of interpolate_shells for the formal integral (#1512) (@chvogl)
• #1499 Enable full tests for Formal Integral (#1499) (@aribalam)
• #1530 Typos in git_workflow guide (#1530) (@Molkree)
• #1535 Fix macOS tests (pickle protocol 5) (#1535) (@epassaro)
• #1478 Create a symlink of tardis_example.yml (#1478) (@yuyizheng1112)
• #1527 rtd-theme is incompatible with docutils 0.17 (#1527) (@atharva-2001)
• #1526 enable manual trigger for docs (#1526) (@epassaro)
• #1517 Add catch for missing elements in SDEC plot (#1517) (@MarkMageeAstro)
• #1483 corrected_csvy_model_files (#1483) (@antreev-brar)
• #1479 getting rid of PerformanceWarning: indexing past lexsort depth may impact performance. (#1479) (@atharva-2001)
• #1506 Add ability to plot only top contributing elements to SDEC plot (#1506) (@MarkMageeAstro)
• #1509 Collisional ionization (#1509) (@chvogl)
• #1477 added option for keyword arguments in spectrum plot function (#1477) (@aribalam)
• #1474 Updated Z value of O (#1474) (@ankur-soni97)
• #1498 Feature request: add virtual-packet-logging option to run_tardis() (#1498) (@yuyizheng1112)
• #1502 add missing / in .coveragerc file (#1502) (@yuyizheng1112)
• #1492 Fix docstring mistakes in #1145 (#1492) (@chvogl)
• #1505 Fixing hyperlink (#1505) (@KevinCawley)
• #1481 Added Documentation for Parallel execution with Numba and OpenMP (#1481) (@aribalam)
• #1145 Add photoionization-related rates (#1145) (@chvogl)
• #1470 Incorporating old physics section of the documentation (#1470) (@smithis7)
• #1459 Removed the deprecated --with-vpacket-logging flag (#1459) (@antreev-brar)
• #1462 Renamed widgets subpackage to visualization and restructured modules within it (#1462) (@jaladh-singhal)
• #1464 Fix the array types when interpolate_shells > 0 (@Rodot-)
• #1454 Reorganizing Models (#1454) (@smithis7)
• #1458 Added option to create redirects in docs configuration and redirected gui to visualization (#1458) (@jaladh-singhal)
• #1457 Reproduced SDEC plots in demo notebook (@jaladh-singhal)
• #1446 Fixed italicised Units in sdec_plot (#1446) (@DhruvSondhi)
• #1438 Add documentation for Spectral Element Decomposition Plot (#1438) (@jaladh-singhal)
• #1455 numba_warning (#1455) (@antreev-brar)
• #1442 Fixed distance parameter not producing accurate SDEC plots (#1442) (@jaladh-singhal)
• #1432 fix update changelog workflow (#1432) (@epassaro)
• #1441 Rename SEDec to SDEC in Spectral element DEComposition plot (#1441) (@jaladh-singhal)
• #1430 compare refdata with arbitrary labels (#1430) (@epassaro)
• #1431 Documentation guidelines hotfix (#1431) (@KevinCawley)
• #1424 Rename Kromer Plot to Spectral Element Decomposition (SEDec) Plot (#1424) (@jaladh-singhal)
• #1409 add docstr-coverage workflow (#1409) (@epassaro)

v3.0.dev3801 (2021/01/08 21:28 +00:00)

• #1393 update env file (#1393) (@epassaro)

v3.0.dev3794 (2020/12/21 15:22 +00:00)

• #1241 Add modified Kromer plot to work with widgets (@jaladh-singhal)

v3.0.dev3769 (2020/12/18 21:07 +00:00)

• #1395 Update Matterbridge docs (#1395) (@epassaro)
• #1369 Fix incorrect docstrings (#1369) (@KevinCawley)
• #1383 add preview docs section (#1383) (@epassaro)
• #1392 Fix documentation build (#1392) (@epassaro)
• #1387 Revert "Fixing docs building problem (#1387)" (#1394) (@andrewfullard)
• #1387 Fixing docs building problem (#1387) (@smithis7)
• #1380 Packet logging fixes for visualization (@andrewfullard)
• #1384 Small fixes for existing workflows (#1384) (@epassaro)

v3.0.dev3756 (2020/12/11 19:43 +00:00)

• #1382 Fixing Quickstart Problem (@smithis7)
• #1379 Reorganizing files in docs (2/2) (@smithis7)
• #1378 Adding Plasma File in TOC (@smithis7)
• #1371 Reorganizing files in docs (1/2) (@smithis7)
• #1372 Update CI doc section (#1372) (@epassaro)
• #1375 Fixed real packet logging of properties (@andrewfullard)
• #1354 Virtual packet logging fix (@andrewfullard, @wkerzendorf, @Rodot-, @chvogl, @arjunsavel)
• #1368 Fix of Issue #1176 (@KevinCawley)
• #1365 Parallel numba setup (@andrewfullard, @wkerzendorf, @Rodot-, @chvogl, @arjunsavel)
• #1331 Update changelog workflow (@epassaro)

v3.0.dev3698 (2020/12/04 19:50 +00:00)

• #1366 Fix duplicate appending of scalars in HDF writer and add an overwrite option (@jaladh-singhal)
• #1364 Fixing issue #1357 (@smithis7)
• #1359 Fix of Issue #680 (#1359) (@KevinCawley)
• #1361 Fixing issue #1177 (#1361) (@smithis7)

v3.0.dev3680 (2020/11/25 18:38 +00:00)

• #1358 Fix C formal integral (@andrewfullard, @chvogl)
• #4 Fixed two random indentation irregularities found upon review (@KevinCawley)
• #3 Fixed the last file for #680 (@KevinCawley)
• #2 Fixing Issue #680 (@KevinCawley)

v3.0.dev3673 (2020/11/18 16:26 +00:00)

• #1353 fix doc workflow (@epassaro)
• #1349 Adding documentation for research articles that used TARDIS (@KevinCawley)
• #929 This is a year worth of work from many people and hopefully will make TARDIS easier to use and develop on. Co-authored-by: Andrew Fullard [email protected] Co-authored-by: Jack O'Brien [email protected] Co-authored-by: Christian Vogl [email protected] Co-authored-by: Andreas Flörs [email protected] Co-authored-by: Luke Shingles [email protected] Co-authored-by: Alice Harpole [email protected] Co-authored-by: Marc Williamson [email protected] Co-authored-by: Yssa Camacho [email protected] Co-authored-by: Arjun Savel [email protected] Co-authored-by: Stuart Archibald [email protected] Co-authored-by: Siu Kwan Lam [email protected] (@andrewfullard, @wkerzendorf, @Rodot-, @chvogl, @arjunsavel)
• #929 Numba montecarlo (@andrewfullard, @wkerzendorf, @Rodot-, @chvogl, @arjunsavel)
• #1 Updating my Version of Tardis and Fixing Environment (@wkerzendorf, @epassaro, @jaladh-singhal, @morganlee123, @Ak0303, @arjunsavel)

v3.0.dev3541 (2020/11/10 18:45 +00:00)

• #1340 Moved staticmethods of line_info module to a dedicated plot_util module (@jaladh-singhal)

v3.0.dev3539 (2020/11/04 16:50 +00:00)

• #1333 Rename testing pipeline (#1333) (@epassaro)
• #1300 Remove pip install option from installation docs (#1300) (@jaladh-singhal)
• #1330 Small fix for release pipeline (#1330) (@epassaro)
• #1332 Remove helper scripts (#1332) (@epassaro)
• #1335 Updated gitignore to ignore auto-generated files (#1335) (@jaladh-singhal)
• #1326 Add workflow for autodeploying documentation to github pages via an action (#1326) (@morganlee123)
• #1319 Numba montecarlo tests merged (#1319) (@chvogl)
• #1283 Changed latex strings to raw strings (#1283) (@Ak0303)
• #1310 Apply new template to refdata pipeline (#1310) (@epassaro)
• #1308 Apply new template to release pipeline (#1308) (@epassaro)
• #1318 Numba montecarlo profile1 (@wkerzendorf)
• #1317 Fixed calculate_distance_line showing nu_diff < 0 (#1317) (@Rodot-)
• #1309 Re-add C formal integral (#1309) (@chvogl)

v3.0.dev3527 (2020/10/05 16:43 +00:00)

• #1313 Create FUNDING.yml (#1313) (@jaladh-singhal)

v3.0.dev3526 (2020/10/01 09:50 +00:00)

• #1312 Initial commit (#1312) (@epassaro)
• #1274 Add space to plasma error message (@arjunsavel)
• #1280 Add widgets documentation to tardis docs (@jaladh-singhal)

v3.0.dev3510 (2020/09/25 15:56 +00:00)

• #1299 Model configuration output in HDF (#1299) (@andrewfullard)
• #1304 Use tardis-refdata from Azure mirror (CI/CD) (#1304) (@epassaro)
• #1264 Add line info widget to widgets subpackage (#1264) (@jaladh-singhal)

v3.0.dev3504 (2020/09/09 10:16 +00:00)

• #1296 Pin pyne to 0.7.0 (#1296) (@andrewfullard)

v3.0.dev3503 (2020/09/04 09:18 +00:00)

• #1291 Download atom data from opensupernova mirror (#1291) (@epassaro)
• #1285 Final numba PR (#1285) (@arjunsavel)
• #1254 Fix how virtual_packet properties are saved in hdf (#1254) (@jaladh-singhal)
• #1278 Pin numpy to v1.17 (#1278) (@epassaro)

v3.0.dev3500 (2020/08/12 09:52 +00:00)

• #1271 Pin numpy to v1.19.0 (#1271) (@epassaro)
• #1266 Move to Pandas 1.x (#1266) (@epassaro)
• #1244 Explicitly pass number of vpackets to montecarlo_main_loop (#1244) (@arjunsavel)
• #1235 test and fix for issue #1228 (#1235) (@ebjordi)

v3.0.dev3497 (2020/08/07 15:26 +00:00)

• #1267 Temporarily fetch refdata from GDrive (#1267) (@epassaro)
• #1265 add GIT_LFS_SMUDGE (#1265) (@kaushik94)
• #1262 Update package versions (#1262) (@epassaro)
• #1263 Clean up status badge display (#1263) (@chvogl)
• #1261 Add governance document (#1261) (@wkerzendorf)

v3.0.dev3487 (2020/07/30 22:18 +00:00)

• #1259 emphasised reporting guidelines in code of conduct (#1259) (@harpolea)
• #1255 Pin pyne to v0.5 (#1255) (@epassaro)
• #1213 Re-applied Black formatting to tardis after excluding undesired directories (#1213) (@jaladh-singhal)

v3.0.dev3484 (2020/07/19 14:30 +00:00)

• #1210 [MRG] Using Mamba in Pipelines (#1210) (@kaushik94)
• #1237 Add new Contribution guidelines (#1237) (@jaladh-singhal)
• #1238 code of conduct symlink (#1238) (@wkerzendorf)
• #1234 TARDIS Code of Conduct (#1234) (@wkerzendorf)
• #1233 Update of the Governance model (#1233) (@wkerzendorf)
• #1231 Roadmap Documentation Page (#1231) (@marxwillia)
• #1227 Update base.py (#1227) (@arjunsavel)

v3.0.dev3477 (2020/07/09 03:06 +00:00)

• #1218 Move and rename coverage file (#1218) (@arjunsavel)
• #1224 Added better mission statement (@wkerzendorf)
• #1190 Change pytestconfig to request.config (#1190) (@epassaro)
• #1219 Update index.rst (#1219) (@ycamacho)
• #1136 Debugging relativity on numba_montecarlo (#1136) (@arjunsavel)

v3.0.dev3472 (2020/06/27 20:11 +00:00)

• #1203 Minor changes to the environment file and cleanup (#1203) (@epassaro)
• #1209 add sashank27 orcid (#1209) (@sashank27)
• #1207 add git-blame-ignore for code style black Changes (#1207) (@wkerzendorf)
• #1201 Code style black (#1201) (@wkerzendorf)
• #1200 Added jaladh-singhal's orcid (#1200) (@jaladh-singhal)
• #1197 add arjun's name to the ORCID list (#1197) (@arjunsavel)
• #1166 Create a new subpackage for jupyter-widgets and add shell info widgets (#1166) (@jaladh-singhal)

v3.0.dev3463 (2020/06/19 22:51 +00:00)

• #1195 Fix badges in README.rst (#1195) (@epassaro)
• #1193 Unpin astropy version (#1193) (@epassaro)
• #1191 Add note to tell users which OS are supported (issue #1125) (#1191) (@ebjordi)
• #1158 Make consistency edits to documentation (#1158) (@arjunsavel)

v3.0.dev3459 (2020/06/12 18:01 +00:00)

• #1185 Upgrade pytest version (#1185) (@epassaro)

v3.0.dev3458 (2020/06/02 19:11 +00:00)

• #1180 Remove test pipeline (#1180) (@epassaro)
• #1153 update doc page to a notebook (#1153) (@sashank27)
• #1150 Fix the Plasma tests (#1150) (@wkerzendorf)
• #1178 Fix Jack O`Brien and Jordi Eguren author names (#1178) (@epassaro)
• #1171 Changed a print from python 2 to python 3 (#1171) (@arjunsavel)
• #1165 Fix callbacks in run_tardis (@Rodot-)

v3.0.dev3448 (2020/05/28 17:08 +00:00)

• #1173 Fix GUI and plasma tests (@epassaro)
• #1168 add checkpoint to PR template checklist (#1168) (@harpolea)
• #1162 Remove duplicated export (#1162) (@epassaro)

v3.0.dev3442 (2020/05/21 23:34 +00:00)

• #1159 Fixed crash when integrating in parallel. Crash was previously caused by a double free error. Removing the last call to free caused the spectrum to be computed incorrectly, indicating that the structure of the parallelism was at fault. I removed the firstprivate declaration from the first call to omp parallel as there was no need to make copies of the pointers for each thread (was this even a reasonable thing to do since each thread would have to reallocate the arrays anyway?). There also did not appear to be any need to maintain copies of L or exp_tau for each thread. I then moved the last call to free outside of the parallel section. So now there is no memory allocation or deallocation of L or exp_tau in a parallel block, and exp_tau is freed only once as it should be (#1159) (@Rodot-)
• #1155 add codecov to azure pipelines (#1155) (@wkerzendorf)
• #1157 Update .mailmap (#1157) (@epassaro)

v3.0.dev3439 (2020/05/20 13:25 +00:00)

• #1142 Split release pipeline (#1142) (@epassaro)
• #1151 Git ignored VSCode specific files (#1151) (@jaladh-singhal)
• #1149 Made plot size larger in quickstart notebook (#1149) (@jaladh-singhal)
• #1147 allow downloading of example file in quickstart (#1147) (@sashank27)
• #1105 Add skip condition if QT_API is no set (issue #1101) (@ebjordi)
• #1143 Set manual trigger on file (compare refdata) (@epassaro)
• #1144 add option to execute quickstart in build (#1144) (@sashank27)

v3.0.dev3424 (2020/05/07 15:29 +00:00)

• #1133 Solve pending issues of the release pipeline (#1133) (@epassaro)
• #1141 fix warnings in quickstart (#1141) (@sashank27)
• #1137 Increasing glob-like omission of coverage files (#1137) (@arjunsavel)
• #1139 Added more file types to git ignore (#1139) (@jaladh-singhal)
• #1134 Update mailmap (@epassaro)
• #1135 Running tests on MacOS-10.14 (@epassaro)
• #1068 Migrate gui to PyQt5 (issue #988) (#1068) (@ebjordi)
• #1085 Solves issue #680 for tardis.util.base (i.e. numpydocs format for doc strings.) (@Phantsure)
• #1055 renamed capmanager class functions (#1055) (@not4win)
• #1048 Re-activate TARDIS tests (#1048) (@epassaro)

v3.0.dev3409 (2020/02/25 04:02 +00:00)

• #1046 Updated zenodo.json (#1046) (@epassaro)
• #1045 Fix file paths at diff step in release pipeline (#1045) (@epassaro)
• #1040 Re-activate release job (#1040) (@epassaro)
• #1039 Update .mailmap (#1039) (@epassaro)

v3.0.dev3403 (2020/02/19 15:55 +00:00)

• #1031 Create Zenodo JSON file (#1031) (@epassaro)
• #1036 Update zenodo.json (#1036) (@epassaro)
• #1035 Update .mailmap (#1035) (@epassaro)
• #1034 Update .mailmap (#1034) (@epassaro)
• #1032 Add Mark Magee to .mailmap (#1032) (@epassaro)
• #1025 Add compilers to environment YAML file (#1025) (@epassaro)
• #1026 Minor changes (#1026) (@epassaro)
• #1027 Added Mark Magee (#1027) (@MarkMageeAstro)
• #1024 Add epassaro orcid (#1024) (@epassaro)
• #1022 added Alice's orcid (#1022) (@harpolea)
• #1021 Set cron job, disable CI and PR (#1021) (@epassaro)
• #1015 Set up release TARDIS version with Azure Pipelines (#1015) (@epassaro)
• #1020 Update .mailmap (#1020) (@livnehra)
• #1018 Updated .mailmap (#1018) (@epassaro)
• #1010 Pipeline for comparing reference data (#1010) (@epassaro)
• #1016 Removed GH Action for release versions (#1016) (@epassaro)
• #1013 Fixed typo (#1013) (@epassaro)
• #1006 Trying to get the right version number for automatic release (#1006) (@epassaro)
• #1008 Improvements for the update_reference section [docs] (#1008) (@epassaro)
• #1011 Gui fix (#1011) (@marxwillia)
• #1009 Fix for packet source unit test (#1009) (@epassaro)
• #1007 Fix for vboundary tests (#1007) (@epassaro)
• #995 Checking failing tests on Azure (#995) (@kaushik94)
• #1005 Add YML file for release version (#1005) (@epassaro)
• #1004 Fixed csvy abundance indexing bug (#1004) (@marxwillia)
• #1003 Custom source packets (#1003) (@marxwillia)
• #994 Large cleanup operation (#994) (@wkerzendorf)
• #992 Changes made to update_refdata documentation (#992) (@kowal180)
• #967 log additional properties in hdf witeout when --with-vpacket-logging is present (#967) (@kaushik94)
• #969 Fixes numpydoc for util (#969) (@kowal180)
• #985 Fix typo (#985) (@jreichenbach-msu)
• #983 Fix git clone rendering in installation (#983) (@jreichenbach-msu)
• #982 Pinned numpy to v1.15 (#982) (@epassaro)
• #978 Add further fix to quickstart link (#978) (@jreichenbach-msu)
• #975 Add links to Quickstart (#975) (@jreichenbach-msu)
• #971 Fix formal integral spikes bug (see #970) (#971) (@chvogl)
• #968 Fixed GUI #950 tardis/gui/widgets.py (@jamesgillanders)
• #965 Isotope time0 (#965) (@marxwillia)
• #966 fix AtomData repr. (#966) (@wkerzendorf)
• #964 Raise error if requested atoms are not in the atomic data (#964) (@chvogl)
• #959 Csvy model config dict (#959) (@marxwillia)
• #949 Add issue template (#949) (@Youssef15015)
• #960 Save integrated spectrum to hdf if requested (#960) (@chvogl)
• #957 add blondin converter (#957) (@wkerzendorf)
• #956 Dilution factor fix (#956) (@marxwillia)
• #953 add code comparison (#953) (@wkerzendorf)
• #952 Base schema fix (#952) (@marxwillia)
• #951 Documentation restructure (@wkerzendorf, @marxwillia)
• #26 Added Model Doc Page (#26) (@marxwillia)
• #943 Update General CI Documentation (#943) (@Youssef15015)
• #936 csvy_model (@Youssef15015, @marxwillia)
• #940 parent 8d9001822f586857f2f8353a56185310832886dc (@Youssef15015)
• #942 Update self-hossted agent documentaiton (#942) (@Youssef15015)
• #946 Update build documentation script (@Youssef15015)
• #945 Revert "Remove PR Trigger" (@wkerzendorf)
• #944 Remove PR Trigger (@Youssef15015)
• #939 Deploying documentation using Azure (@Youssef15015)
• #940 Correct index script spelling (#940) (@Youssef15015)
• #928 Added csvy parser (#928) (@marxwillia)
• #933 Radiative recombination (#933) (@chvogl)
• #934 Relocated the azure_pipelines.yml into a new directory called pipelines, and renamed it as pipeline_A (#934) (@Youssef15015)

v3.0-alpha.3 (2019/05/13 22:05 +00:00)

• #930 Fix for conda-forge package (#930) (@epassaro)
• #918 Density docs (#918) (@marxwillia)
• #926 Adding a TARDIS data repo (#926) (@wkerzendorf)
• #924 Migrate beta_sobolev calculation from cython to numba (#924) (@chvogl)
• #925 Docs/fix changelog (@wkerzendorf)
• #923 Fix nlte normalization (@livnehra)
• #920 Revert "Fix nlte normalization (#920)" (#922) (@wkerzendorf)
• #920 Fix nlte normalization (#920) (@wkerzendorf)
• #921 add changes builder to travis process (#921) (@wkerzendorf)
• #919 Add possibility to bias vpacket emission based on optical depth (#919) (@chvogl)
• #914 make python3 compatible (#914) (@wkerzendorf)
• #902 general overhaul of the docs for 3.0 (#902) (@wkerzendorf)
• #916 make python3 compatible (#916) (@wkerzendorf)
• #915 Parsing STELLA files for TARDIS (#915) (@sarafina325)
• #911 Use Russian roulette to kill v-packets with negligible weight (#911) (@chvogl)
• #697 Relativity (#697) (@chvogl)

v3.0.a1 (2019/03/10 15:03 +00:00)

• #901 .nojekyll added to docs (#901) (@debajyotidasgupta)
• #897 add pytest azurepipelines (#897) (@wkerzendorf)
• #896 Adding general build artefacts (#896) (@wkerzendorf)
• #894 Azure pipeline for TARDIS (#894) (@wkerzendorf)
• #893 add doctr to TARDIS (#893) (@wkerzendorf)
• #892 adding azure-pipelines (#892) (@wkerzendorf)
• #891 New template setup from astropy (#891) (@wkerzendorf)
• #888 Update installation.rst (#888) (@nileshpatra)
• #886 Pandas ix fix (#886) (@wkerzendorf)
• #879 Python3 version of TARDIS (#879) (@wkerzendorf)
• #881 Adds description of gcc problem to documentation (#881) (@ycamacho)
• #859 Use interpolated values to do formal integral with more shells (#859) (@chvogl)
• #873 Some small fixes related to the documentation and the building process (Fix #842) (#873) (@unoebauer)
• #868 Add Travis Stages: Activate Integration tests (#868) (@unoebauer)
• #866 Add Travis Caching and separate scripts for CI (#866) (@wkerzendorf)
• #864 Unify unittest hdfs (#864) (@unoebauer)
• #865 Adding CodeCov integration (#865) (@wkerzendorf)
• #860 add call_back to run_tardis (#860) (@wkerzendorf)
• #863 Thomson cross section: Continuation of PR #688 (#863) (@unoebauer)
• #850 Add full test for formal integral method (#850) (@unoebauer)
• #861 Describe refdata update and workflow refactor (#861) (@wkerzendorf)
• #848 Add capability to store information about the plasma state during iterations (#848) (@unoebauer)
• #857 Refactor logging (#857) (@wkerzendorf)
• #856 Extend formal integral to line_interaction_type macroatom (#856) (@chvogl)
• #855 Make the conda-forge channel the only channel (#855) (@wkerzendorf)
• #853 Fix formal integral (#853) (@chvogl)
• #849 Missing refdata (#849) (@wkerzendorf)
• #851 add atomic data description (#851) (@wkerzendorf)
• #845 Update Documentation: new location of tardis_example (#845) (@unoebauer)
• #843 Fix issue with custom_composition reader (#843) (@unoebauer)
• #844 Remove bbsampling from schema file (#844) (@pfreddy)
• #837 Add json sphinx (#837) (@wkerzendorf)
• #841 Fixed indentation and position of delta_treatment in plasma/standard_plasmas.py (#841) (@Heringer-Epson)
• #838 fix cython version to specific commit (#838) (@wkerzendorf)
• #821 Simplify convergence strategies (#821) (@unoebauer)
• #833 restructure landing page to use notebooks (#833) (@wkerzendorf)
• #832 Fixes #830 (#832) (@unoebauer)

v2_test3 (2018/06/18 20:13 +00:00)

• #829 build bleeding edge cython (#829) (@wkerzendorf)
• #828 trying to get travis to build (#828) (@wkerzendorf)
• #827 Update travis link to miniconda (#827) (@unoebauer)
• #826 Remove docu refs to tardis_example.tar.gz (#826) (@unoebauer)
• #820 update of mailmap (#820) (@wkerzendorf)
• #819 Reintroduce and update changelog (#819) (@unoebauer)
• #815 Update and Fix Documentation (#815) (@unoebauer)
• #816 Remove old and broken badges (@unoebauer)
• #814 Fix numpydoc problem (@wkerzendorf, @unoebauer)

v2.0 (2018/04/05 13:03 +00:00)

• #812 Update of documentation (@unoebauer)
• #809 fix dependencies for tardis conda env (#809) (@wkerzendorf)
• #761 Add caching for integrated spectrum: Fix #760 (@unoebauer)
• #715 Merge 'generate_reference_path' and 'reference_path' in integration tests (bug #672) (@rinklejain)
• #801 Decay of isotopes branch (@wkerzendorf, @vg3095, @pfreddy)
• #806 Fix reference dictionary problem (@pfreddy)
• #803 include yml files in MANIFEST (@wkerzendorf)
• #802 Fix for PR #801 (@vg3095)
• #799 tardis/plasma/standard_plasmas.py: old database files warning (@laudb)
• #797 Minor Updates: Fixes for #521 and #699 (@unoebauer)
• #796 Prevent pandas SettingWithCopyWarning by copying DataFrames when slicing (@lukeshingles)
• #795 Force deactivate LaTeX in GUI - Fix #441 (@unoebauer)
• #793 Add pyside to requirements (needed for GUI) (@wkerzendorf, @unoebauer)
• #794 add new readthedocs.yml (@wkerzendorf)
• #792 Fix compatibility with networkx 2.0 (@lukeshingles)
• #791 Propagate changes to the line index into the GUI code (@yeganer)
• #786 The final carsus merge (@yeganer, @ftsamis, @mishinma)
• #782 Plasma write_to_tex/dot unit tests (@vg3095)
• #781 Omit coverage of test related files (@vg3095)
• #785 [DOC] Update Running tests doc (@vg3095)
• #774 Replace Comparison values in Plasma Unit Tests with reference HDF file (@vg3095)
• #780 LevelBoltzmannFactorNLTE.from_config is now a staticmethod (@yeganer)
• #778 Fix NLTE (@yeganer)
• #776 Fix compatibility bug in radiative_properties (@yeganer)
• #779 Save coverage report when tests use tardis-refdata (@vg3095)
• #775 Transition from atomic-dataset config option to tardis-refdata (@vg3095)
• #772 [TEP007] CMFGEN density parser (@vg3095)
• #771 [TEP007] Add cmfgen2tardis script (@vg3095)
• #757 [TEP007] Decay and merge isotopic abundance dataframe (@vg3095)
• #769 [TEP014] [DOC] Updated to_hdf notebook (@vg3095)
• #759 Formal Integral: including electron scattering (@unoebauer, @yeganer)
• #768 [TEP014] Simulation HDF and deprecated to_hdf cleanup. (@vg3095)
• #773 Update Documentation (@unoebauer)
• #767 [TEP007] Docs for isotope config (@vg3095)
• #764 [TEP007] Isotope stratified file support (@vg3095)
• #752 [TEP014] PlasmaWriterMixin (@vg3095)
• #748 [TEP014] Update Runner and Spectrum classes to use HDFWriter + Unit Tests (@vg3095)
• #762 [TEP007] Isotope uniform config option (@vg3095)
• #765 Attempt to fix up the GUI (@ssim, @unoebauer)
• #13 Introduce proper masking for GUI (addition to PR #765) (@unoebauer)
• #1 Streamline the OMP implementation (@yeganer)
• #756 [TEP007] [WIP] Isotope Abundances class (@vg3095, @wkerzendorf)
• #758 Add new version to tardis_env27 and add pyne (@wkerzendorf)
• #753 [TEP014][DOC] HDFWriter Documentation (@vg3095)
• #740 [GSoC] Formal integral Project (@yeganer)
• #747 [TEP014] Update Model and Density classes to use HDFWriter + Unit Tests (@vg3095)
• #750 [TEP005][QOL] Add MontecarloRunner.spectrum_integrated (@yeganer)
• #749 [TEP014] Change name of HDFWriter to HDFWriterMixin (@vg3095)
• #745 [TEP005][DOC] Documentation (@yeganer)
• #751 [QOL] Add default axis to TARDISSpectrum.plot (@yeganer)
• #743 Fix bug in plasma (@yeganer)
• #744 [TEP014] Added HDFWriter class + Unit Tests (@vg3095)
• #746 [TEP005][CONFIG] Prevent incompatible configurations (@yeganer)
• #741 Add unit tests for the formal integral (@yeganer)
• #742 Fix clash in RTD dependencies (@yeganer)
• #735 Move common ctest fixtures into conftest.py (@yeganer)
• #729 Refactor spectrum (@yeganer)
• #730 Fix test_plasma_simple not skipping properly (@yeganer)
• #712 Colorize Logger (@vg3095)
• #718 Unit test for untested method of montecarlo simulation code (@suyashgupta20)
• #724 Rebase PR #678 (@yeganer)
• #709 Add note about broken GUI to docu (@unoebauer)
• #708 Add new installation instructions (@wkerzendorf)
• #704 Fix ignoring model tests (@ftsamis)
• #700 Add contributing guidelines (@wkerzendorf)
• #686 converted spectrum_frequency (@chinmay0301)
• #696 Add missing diagnostics property to runner's to_hdf list (@unoebauer)
• #694 Significantly reduce peak memory usage when vpacket logging is enabled (@ftsamis)
• #682 Import montecarlo.base in the init module of the package. (@ftsamis)
• #670 Integrate continuum interactions into cmontecarlo (@chvogl)
• #652 [TEP006] Aggregate TARDIS restructure and configuration system cleanup (@ftsamis)
• #677 Update link to tardis_example.yml in documentation - Fix #676 (@unoebauer)
• #674 Change matplotlib backend - fix test_integration remote plotting issue (@unoebauer)
• #664 Kd final test (@wkerzendorf, @yeganer)
• #21 fKd final test (@yeganer)
• #668 change to tardis atom data on git lfs (@wkerzendorf)
• #666 Remove News from main TARDIS github page (@unoebauer)
• #667 Update SOCIS and GSOC students credits (@unoebauer)
• #665 Add to_hdf compression (@yeganer)
• #663 Develop (@tardis-sn)
• #657 Require pyyaml 3.12 (@ftsamis)
• #659 Update installation docs (@ftsamis)
• #653 Facility to provide per-setup atom data as well as save report locally. (@karandesai-96)
• #641 Fix detailed radiative rates (@yeganer)
• #642 Use pytest-html==1.10.0, modify DokuReport class accordingly. (@karandesai-96)
• #630 [IntegrationTests] Overview page on Dokuwiki.

Running the integration tests will update an overview page on DokuWiki. (@karandesai-96)

• #620 Runner script to automate execution of integration tests. (@karandesai-96)
• #628 Remove exponent property from yaml files with exponential density (@ftsamis)
• #626 Revert "Add exponent as a property for exponential density" (@ftsamis)
• #542 Updates to He NLTE treatment. (@aoifeboyle)
• #612 Add facility to generate and accept HDF files as reference data for Integration Tests. (@karandesai-96)
• #614 Omit the integration_tests when running coveralls (@yeganer)
• #619 Fixed incorrect name in error message (@Tobychev)
• #618 to_hdf: If only the last run is stored, do not add a counter in the name (@ftsamis)
• #617 Add a to_hdf method on TARDISSpectrum (@ftsamis)
• #600 Parametrize the Slow Test class with two setups. (@karandesai-96)
• #613 Fix bug in montecarlo.pyx (@yeganer)
• #595 Line absorption rate estimator (@Tobychev)
• #606 Merge to_hdf (@ftsamis, @wkerzendorf)
• #585 [TEP002] Add a to_hdf method to the MontecarloRunner (#585) (@ftsamis)
• #597 Use abundances, densities filepaths relative to w7 config file. (@karandesai-96)
• #569 Added a conda environment for tardis (@wkerzendorf)
• #565 Change the way AtomData quantities are initialized (@yeganer)
• #599 Update the tardis_example tar file provided in the documentation. (@ftsamis)
• #598 Fix convergence handling in run_legacy_simulation - fix issue #593 (@unoebauer)
• #590 Link images of comparison plots in DokuReport using hookwrapper. (@karandesai-96)
• #591 Fix path of CSS and JS files used in html report. (@karandesai-96)
• #594 Provide tardis.yaml_load shortcut (@yeganer)
• #592 Fix virt energy (@yeganer)
• #583 Subclass pytest-html's HTMLReport to DokuReport class for report generation and upload (@karandesai-96)
• #587 Move the three spectra attributes from Radial1DModel to MontecarloRunner (@ftsamis)
• #578 Shift slow test related pytest hooks in lower level conftest.py (#578) (Karan Desai)
• #581 Update several files to match package_template (@yeganer)
• #576 [config-system] Validator rewrite: Use jsonschema (@ftsamis)
• #575 Replace misused calls to yaml.load with a helper function. (@ftsamis)
• #570 Enable generation of html report of integration tests, and upload to dokuwiki. (@karandesai-96)
• #574 tardis/base.py: Remove duplicate code from run_tardis (@ftsamis)
• #573 io/util.py (YAMLLoader): Use OrderedDict to store loaded YAML (@ftsamis)
• #572 Change the way YAMLLoader resolves some properties (@ftsamis)
• #532 Documentation overhaul (@unoebauer, @chvogl)
• #571 data/tardis_config_definition.yml: Set the exponent property as mandatory when density is exponential. (#571) (@ftsamis)
• #566 Initial laydown of comparison plots for TestW7. (#566) (Karan Desai)
• #567 Accept keyword arguments for Configuration.from_yaml (@yeganer)
• #561 TestW7: Assertions for spectrum quantities, fixture for handling baseline data. (@karandesai-96)
• #515 [config-system] Add a custom YAML Loader to parse astropy quantities (@ftsamis)
• #555 Use pytest's monkeypatch.chdir to change the working directory in the config_reader tests (@ftsamis, @lukeshingles)
• #558 Integration Test class for Stratified W7 setup. (@karandesai-96)
• #557 Enable skipping slow tests. (@karandesai-96)
• #544 Continue cmontecarlo tests refactor. Extend #530. (@karandesai-96)
• #543 Fix issue #535: Treat rel. paths inside config relative to the config file (@lukeshingles, @ftsamis)
• #1 Write tests for the issue #535 fix. (@ftsamis)
• #551 Add SOCIS 2016 advertisement (@unoebauer)
• #547 Fix Issue #548 (@karandesai-96)
• #545 added mailmap to compile the commits for each person (#545) (@wkerzendorf)
• #539 Adding OSX to our travis build (#539) (@wkerzendorf)
• #541 Move progress bar update after calculation (#541) (@yeganer)
• #540 Mirroring C enums in Python for CMontecarlo tests. (@karandesai-96)
• #538 Upgrading to the new Readthedocs infrastructure (#538) (@wkerzendorf)
• #530 Refactor cmontecarlo testing framework (@karandesai-96)
• #537 Ignore invalid OpenMP nthreads values (#537) (@yeganer)
• #533 Remove rpacket.recently_crossed_boundary flag (@yeganer)
• #514 Performance (@yeganer)
• #531 Organize headers in C-Extension (@yeganer)
• #526 Docs: Include conda-requirements in installation.rst (@karandesai-96)
• #519 Documentation:Installation modify command (@yeganer)
• #510 Updates requirements to solve libgfortran error. Fixes #509 (@karandesai-96)
• #495 Fix energy conservation (@unoebauer)
• #486 Bugfix radiative rates type detailed (@chvogl, @unoebauer)
• #488 Fix indentation in c extension (@yeganer)
• #494 Fix #493 (@yeganer)
• #1 Add simple test for j_blue_estimator (@unoebauer)
• #491 Include IDE specific auto-generated files in .gitignore. Fixes #490 (@karandesai-96)
• #485 Montecarlo progress (@yeganer)
• #457 Fix Issue #454 (@yeganer)
• #484 Minor improvement of vpacket logging scheme (@unoebauer)
• #479 added units to test_simulation.py (@mishinma)
• #469 Changed the Link for AstroPy's dev workflow (@souravsingh)
• #481 Introcuding safe_malloc and safe_realloc macros: fixes #480 (@unoebauer)
• #475 Reorganize import statements in atomic.py (@Pratik151)
• #471 Quickfix to solve Issue #455 and #464 (@yeganer)
• #472 fixed build of documentation on readthedocs (@wkerzendorf)
• #461 Bugfix test cmontecarlo (@yeganer)
• #452 Build fix and nthreads fix - fixes #356 (@unoebauer)
• #450 Checking for zero-volume cells: Fixes issue #79 (@unoebauer)
• #449 added test to verify virtual spectrum (@unoebauer)
• #446 calculate virtual spectrum independently of vpacket loggin - fixes #445 (@unoebauer)
• #440 started addressing issue #436 (@unoebauer)
• #426 Simulation - restructure (@wkerzendorf)
• #434 updated the .travis.yml file to do a rehash before executing conda (@wkerzendorf)
• #433 Optional vpacket logging WIP (@tardis-sn)
• #425 Updated nlte.rst (@souravsingh)
• #424 added a new requirement for astropy (@wkerzendorf)
• #1 Update nlte.rst (@souravsingh)
• #375 made sure that atomic does not reinsert the index into the dataframe (@wkerzendorf)
• #420 Memory issue (@wkerzendorf)
• #416 added new version requirements for pandas and astropy (@wkerzendorf)
• #414 Improvements to He approximation. (@aoifeboyle)
• #413 WIP Docstrings (@wkerzendorf)
• #412 Fix for zeta issues. (@wkerzendorf)
• #3 Plasma/ab zeta fix (@wkerzendorf)
• #410 WIP: Cleaning up plasma (@wkerzendorf)
• #399 Plasma optimization (@wkerzendorf, @mreineck)
• #2 fix for chi_0 problem (@wkerzendorf)
• #19 Plasma optimisation fix. (@aoifeboyle)
• #404 Montecarlo/new packet source (@wkerzendorf)
• #407 Organising of plasma base files. (@aoifeboyle)
• #405 Pandas macroatom issue fix (@wkerzendorf)
• #406 Numerical He NLTE. (@aoifeboyle)
• #401 Alternative fix for issue #393 (@mreineck)
• #398 More cleanups (@mreineck)
• #400 Change to NLTE properties (@aoifeboyle)
• #397 Montecarlo/memoryview (@wkerzendorf)
• #396 added virt_packet properties to to_hdf5 list (Kromer plot) (@unoebauer)
• #391 More work on cmontecarlo.c and the unit tests (@mreineck)
• #364 added tardis stats (@wkerzendorf)
• #392 Consistency between old virtual packet arrays and new ones introduced in PR 384 (@unoebauer)
• #389 changes to address issue #388 (@mreineck)
• #386 improve inlining specifications and fix a few problems (@mreineck)
• #384 Minor changes in Monte Carlo and model part for Kromer plots (@unoebauer)
• #374 WIP: Helium approx. (@wkerzendorf)
• #382 Improvements to plasma graph (@aoifeboyle)
• #381 Fix to plasma issue with GUI. (@aoifeboyle)
• #379 Fix of to_hdf5. (@aoifeboyle)
• #377 Plasma static methods (@aoifeboyle)
• #373 Removing test_plasma_nlte.py. (@aoifeboyle)
• #372 Correcting some old plasma tests. (@aoifeboyle)
• #304 Plasma restructure (@wkerzendorf)
• #370 Removed some tests temporarily. (@aoifeboyle)
• #369 Removed import plasma_array (@aoifeboyle)
• #368 Fixing plasma merge (@aoifeboyle)
• #367 preparing for the new container archictecture used by travis (@wkerzendorf)
• #365 LTE Plasma Test (@aoifeboyle)
• #361 Added formulae to graph. (@aoifeboyle)
• #360 Rebasedvirtrunner (@orbitfold, @wkerzendorf)
• #362 Adjusted stimulated emission factor for NLTE. (@aoifeboyle)
• #355 Add with-openmp to develop (@orbitfold)
• #354 added print statement for openmp (@wkerzendorf)
• #350 Tidying/Testing/Documenting Plasma (@aoifeboyle)
• #352 Attempt at solution. (@aoifeboyle)
• #330 [GSoC 2015 WIP] Testing other montecarlo functions (@kaushik94)
• #347 NLTE (@aoifeboyle)
• #325 Bound-free interactions (@chvogl)
• #344 Plasma/multiple outputs (@aoifeboyle)
• #346 linked the plasma documentation again (@wkerzendorf)
• #338 OpenMP WIP (@orbitfold)
• #343 Plasma/multi output (@wkerzendorf)
• #17 Fixes. (@aoifeboyle)
• #324 Gui package (WIP) (@gautam1168)
• #327 [GSoC 2015 MRG] Testing getters setters (@kaushik94)
• #322 Updating the gui documentation. (@gautam1168)
• #296 Gui with menubars(WIP) (@gautam1168)
• #320 virtual packets frequency cut (@unoebauer)
• #314 Installation FAQ (@wkerzendorf)
• #310 A more detailed description of the montecarlo process (@wkerzendorf)
• #301 [GSoC 2015 MRG] Restructuring Montecarlo (@kaushik94)
• #234 Removing usage of yield in test_utils.py (@kaushik94)
• #299 Test of model_reader.py (@wkerzendorf, @ssim)
• #288 -fixed discrepancy concerning hold_iterations (@unoebauer)
• #286 Proposal for a new to HD5 function. (@mklauser)
• #283 fixed the reader for the older Paper1 format yaml files (@wkerzendorf)
• #269 Miscellaneous README changes (@iKevinY)
• #251 gui.py and running.rst edited for PyQt4 and PySide (@gautam1168)
• #250 Docs/pip reqs (@wkerzendorf)
• #244 added coverage back (@wkerzendorf)
• #240 rename of pip-requirements to conda-requirements (@wkerzendorf)
• #225 Test added in test_atomic.py (@vaibhav4595)
• #223 Update git_workflow.rst (@ujjwalwahi)

v1.0 (2015/03/03 12:58 +00:00)

• #219 fixing run_tardis (@wkerzendorf)

v1.0rc3 (2015/02/19 14:40 +00:00)

• #218 Docs/anaconda install (@wkerzendorf)
• #217 Docs/fixing pip requirements (@wkerzendorf)
• #216 some fixes to the gui so it works with pyside (@wkerzendorf)
• #214 Preparing the docs for V1 (@wkerzendorf)
• #210 a restructure of the C-file file structure (@wkerzendorf, @mklauser)
• #7 include .c in montecarlo/src/ for the randomkit files (@mklauser)
• #209 Testing/pandas version info (@wkerzendorf)
• #205 As simpler run_tardis (@wkerzendorf)
• #206 Minor but critical fix to binary search (reverse) (@ssim)
• #199 Gnuify cmontecarlo.c and cmontecarlo.h files (@orbitfold)
• #203 Docs/reporting bugs (@wkerzendorf)
• #201 A critical warning was added to the model indicating that no packet has left the simulation through the outer boundary. (@mklauser)
• #200 added a new location for the atomic data. (@wkerzendorf)
• #196 New binary search added (@mklauser)
• #169 fix for #168 (@mklauser)
• #194 Setup/fix requirements (@wkerzendorf)
• #188 A macro to automagically fix inline issues (@orbitfold)
• #190 General/fixing unit problems (@wkerzendorf)
• #183 Added colon (@sofiatti)
• #179 making sure that if last_no_of_packets is not specified that it is set t... (@wkerzendorf)
• #178 Atomic/fix reprepare (@wkerzendorf)
• #177 added from_yaml and from_config_dict to ConfigurationNameSpace (@wkerzendorf)
• #175 Fix a few problems in cmontecarlo.c (@orbitfold, @wkerzendorf)
• #174 fixes added for clang compile on mac (@wkerzendorf)
• #171 Fix issues when using clang compiler (issue #170) (@orbitfold)
• #167 fix for #165 (@mklauser, @wkerzendorf)
• #3 testing the new t_inner fix (@wkerzendorf)
• #164 Config/toggle validation (@wkerzendorf)
• #151 WIP Montecarlo C Rewrite (@orbitfold)
• #160 how to get constant density? broken? (@wkerzendorf)
• #158 updated astropy_helpers version (@wkerzendorf)
• #157 added yaml to pip-requirements and linked the doc pip-requirements to this (@wkerzendorf)
• #154 renamed Config to ConfigurationValidator (@wkerzendorf)
• #153 General mixup of 0.9.2b1 (@wkerzendorf)
• #152 importing problems with new C functions? (@wkerzendorf)
• #149 Edits to docs (@ssim)
• #150 Montecarlo flowchart (@orbitfold)
• #148 fixed config_validator log_lsun check (@wkerzendorf)
• #142 WIP Porting utility functions to C (issue #131) (@orbitfold)
• #137 TRAVIS passes. (@wkerzendorf)
• #143 Updating configuration name space (@wkerzendorf)
• #136 Updating the config reader to work with the validator (@wkerzendorf, @mklauser)
• #145 Adding full spectrum generation test to TRAVIS (@wkerzendorf)
• #144 Setup/switch to astropy helpers (@wkerzendorf)
• #6 Pr136 (@mklauser)
• #5 Pr136 (@mklauser)
• #4 Pr136 (@mklauser)
• #3 Pr136 (@mklauser)
• #2 bug fix for the container handling. ToDo Remove remove general except in... (@mklauser)
• #135 Adding documentation for d_inner and d_outer calculation (@wkerzendorf)
• #132 i try to rebase the dp to the master (@mklauser)
• #134 Test high temperature - outside of interpolation range of zeta factor (@wkerzendorf)
• #129 Re-implement binary_search in C (@orbitfold)
• #127 Docs edit only ("accessing physical quantities") (@ssim)
• #116 Adding documentation for Workflow (@wkerzendorf, @ssim)
• #112 NLTE fixes - discussion needed before merge - relates to #109 (@ssim, @wkerzendorf)
• #11 fixing up the NLTE tests (@wkerzendorf)
• #10 Plasma/fix nlte tests (@wkerzendorf)
• #122 proposed restructing of binary search/line search (@ssim, @wkerzendorf, @mklauser)
• #9 Issue 123two (@mklauser)
• #124 updated current_public_table.rst (@wkerzendorf)
• #7 Fix line search (@wkerzendorf)
• #6 updated documentation to numpydoc standard (@wkerzendorf)
• #121 warning added for density file readin outside tabulated range (@ssim)
• #119 Fix to deal with possible problem in end of line list (@ssim)
• #118 Fix for the issue #84 Pull request for fixes / documentation edits related to the profiles (@ssim, @mklauser)
• #91 Documentation update to download atomic databases (@wkerzendorf)
• #110 #106 suggestion for private variable names (@mklauser, @ssim)
• #111 minor fixed / logger statements (@ssim)
• #97 Fix for issue #81: Add warning if w > 1. (@thegyro)
• #92 Adding a simple test to run a full calculation (@wkerzendorf)
• #101 Fix for Issue #88: Moved test functions for tardis.util from test_config_reader (@thegyro)
• #94 Fix coveralls (@wkerzendorf)
• #87 Added --profile and --profiler_log_file command line arguments to enable... (@orbitfold)
• #74 fixed manifest to incluse ez_setup.py and setuptools_bootstrap.py. fixes... (@wkerzendorf)
• #78 cosmetic fixes (@ssim)
• #77 Docs edit (@ssim, @wkerzendorf)
• #1 Docs fix (@wkerzendorf, @ssim)
• #76 stuff with abundance profile readin (@ssim)
• #75 work on gui fixing (@ssim)
• #72 documentation update for release (@wkerzendorf)
• #71 New configuration style (@wkerzendorf)
• #70 added simple coveralls.io in there (@wkerzendorf)
• #69 Atomic/atomic symbols (@wkerzendorf)
• #67 Config/ascii file reader (@wkerzendorf)
• #68 Tests/fixing2 (@wkerzendorf)
• #61 gui fix (@ssim)
• #60 General bugfixing (@wkerzendorf)
• #59 General bugfixing (@wkerzendorf, @nathanielatom, @ssim, @maryampatel)
• #54 Montecarlo/reflection (@ssim)
• #52 Montecarlo/reflection (@ssim, @wkerzendorf, @maryampatel, @nathanielatom)
• #51 Model/optimizig (@nathanielatom)
• #50 Gui/span (@nathanielatom)
• #49 Gui/span (@nathanielatom)
• #48 Gui/span (@nathanielatom, @wkerzendorf, @maryampatel)
• #39 General bugfixing (@wkerzendorf, @nathanielatom, @maryampatel)
• #46 Gui/dialogue (@nathanielatom, @wkerzendorf)
• #41 Gui/docs (@nathanielatom)
• #40 Gui/matplotlib figure (@nathanielatom, @maryampatel)
• #34 General bugfixing (@wkerzendorf)
• #32 Plasma/testing2 (@maryampatel)
• #29 General bugfixing looks good to me (@wkerzendorf)
• #28 The same as last time but with small changes. (@mklauser)
• #26 Plasma/bound free (@mklauser)
• #25 Simulation/run single simulation (@wkerzendorf)

v0.9a (2013/02/14 21:15 +00:00)

• #24 Montecarlo/extract - seems fine merging (@ssim)
• #22 Montecarlo/fix convergence (@wkerzendorf, @ssim)
• #20 Plasma/testing (@maryampatel)
• #18 Docs/fixdocs (@maryampatel)
• #17 Docs/fixdocs (@maryampatel)
• #16 Doc/atomic preliminary merge (@maryampatel)
• #14 Implemented all changes (@maryampatel)
• #13 Changed the main documentation page (@maryampatel)