v0.1.0
0.1.0 (2023-10-19)
Features
- Acknowledgements in about view (#42) (#44) (abd439d)
- ACMG rating of sequence/small variants (#54) (#60) (83540c2)
- Adapt ACMG Rating for multiple sources of info (#65) (#66) (54a2d88)
- Add support for commas in numbers in search Queries (#147) (#157) (d241329)
- Add tool for ACMG assessment of CNVs (#59) (#74) (195003b)
- adding support for login with OpenIDC (#50) (#87) (0ed6e19)
- adjust to annonars v0.24.0 clinvar output (#154) (#166) (08c2374)
- catch-all route in FastAPI allows for deep links in prod (#25) (#26) (454f211)
- Change title (#159) (dfbe284)
- Conflicting evidences in ACMG SV criteria (#120) (061e03f)
- Create Acmg Criteria component (#70) (#73) (7c463f1)
- create initial database setup for project (#49) (#80) (863c046)
- create pages for red tape (#156) (#158) (a604845)
- Default Footer implementation (#33) (#35) (ef6549a)
- Finish integration of genome browser (#102) (#104) (a2f8282)
- Gene-wide variation landscape (#67) (#105) (2ce7de2)
- Implement gene search functionality and gene information page (#11) (#14) (644a2d4)
- Implementation of reverse proxies for
varfish-docker-compose-ng(#10) (#12) (c3884a4) - Implementation of search for general entries (#20) (#37) (eb7b907)
- Improve ACMG rating of sequence/small variants (#64) (#63) (507ad2c)
- integrate dotty to allow querying for HGVS variants (#101) (#110) (781f383)
- Integrate new GTEx and clinvar information as done for VarFish (#61) (#62) (d836edb)
- integration of meahri 0.8.0 (#56) (#103) (b2411a6)
- Link-outs in SV detail page (#143) (#155) (17171a7)
- new
SearchBarwith vuetify Toolbars (#17) (#34) (6043aec) - proper LS-RI-AAI and OrcID login buttons (#163) (#164) (3fa85f7)
- put the current version into docker image and display (#28) (#29) (586af7e)
- Retrieval of affected genes in SV from mehari (#56) (#107) (d16af74)
- setup initial support for local login (#48) (#82) (afead65)
- SV Details View (#55) (#75) (4681e30)
- Update ACMG criteria for CNVs (#76) (#114) (0b572f6)
Bug Fixes
- Add keydown entry to text-field in search bar (#144) (#148) (65dcbdc)
- Add linkout for genes in SV page (#152) (#153) (bc062d8)
- Add support for large displays (#113) (#128) (555fae4)
- Add type definitions (#68) (#71) (607af69)
- adjust default backend service ports for prod (#27) (655e549)
- Change redirection method in genes entrypoint (#161) (#162) (903aa5f)
- Consequences display (#116) (#129) (d4c5e3f)
- Correctly present CADD missing scores (#125) (#133) (3251722)
- database credential access in Docker build (#90) (2d8f3ca)
- Display 0 instead of Nan (#119) (#130) (80901c4)
- Display of clinvar variants in variation landscape (#118) (#127) (b3ab2b3)
- entrypoint.sh in Docker build (#88) (81bfd43)
- fixes to .python-version, docs, .gitignore (#8) (9cf42a4)
- fixing favicon in production (#31) (f1be9fd)
- genotype calls are removed from SV details page (#142, #150) (#151) (5123958)
- Input assembly arg for dotty (#141) (#145) (f349e39)
- Linkout to UCSC (#121) (#132) (7f9c1e4)
- login URL generation (#91) (044e5f3)
- make OAuth2 work with ORCID (#92) (c069ff5)
- menu links for details page and tests (#160) (ad59e9b)
- Non existing variants are not handled gracefully (#109) (#112) (22b2001)
- Present Clinvar information (#124) (#134) (11bfc24)
- properly setup vite build & backend server (#21) (#22) (5459db5)
- properly setup vite proxy for development (#85) (63ec6ac)
- Remove 1000 suffix in genome browser coordinates (#146) (#149) (a4de33c)
- Revel score for nonsense variant (#126) (#139) (d501d98)
- Search works only from second time (#23, #24) (#30) (4ca6249)
- Update link to variant validator (#122) (#131) (eb971cb)
- Update scores for lollipops clinvar plot (#137) (#138) (bc251d3)
- write git version to VERSION in CI (#32) (0649cfe)