feat: Conflicting evidences in ACMG SV criteria (#120)

backend/app/api/internal/endpoints/remote.py

@@ -46,6 +46,27 @@ def default_acmg_rating() -> dict[str, bool]:
     return {k: False for k in ACMG_RATING_KEYS}
 
 
+class CustomHttpAdapter(requests.adapters.HTTPAdapter):
+    # "Transport adapter" that allows us to use custom ssl_context.
+
+    def __init__(self, ssl_context=None, **kwargs):
+        self.ssl_context = ssl_context
+        super().__init__(**kwargs)
+
+    def init_poolmanager(self, connections, maxsize, block=False):
+        self.poolmanager = urllib3.poolmanager.PoolManager(
+            num_pools=connections, maxsize=maxsize, block=block, ssl_context=self.ssl_context
+        )
+
+
+def get_legacy_session():
+    ctx = ssl.create_default_context(ssl.Purpose.SERVER_AUTH)
+    ctx.options |= 0x4  # OP_LEGACY_SERVER_CONNECT
+    session = requests.session()
+    session.mount("https://", CustomHttpAdapter(ctx))
+    return session
+
+
 router = APIRouter()
 
 
@@ -105,27 +126,6 @@ async def acmg(request: Request):
     return JSONResponse(acmg_rating)
 
 
-class CustomHttpAdapter(requests.adapters.HTTPAdapter):
-    # "Transport adapter" that allows us to use custom ssl_context.
-
-    def __init__(self, ssl_context=None, **kwargs):
-        self.ssl_context = ssl_context
-        super().__init__(**kwargs)
-
-    def init_poolmanager(self, connections, maxsize, block=False):
-        self.poolmanager = urllib3.poolmanager.PoolManager(
-            num_pools=connections, maxsize=maxsize, block=block, ssl_context=self.ssl_context
-        )
-
-
-def get_legacy_session():
-    ctx = ssl.create_default_context(ssl.Purpose.SERVER_AUTH)
-    ctx.options |= 0x4  # OP_LEGACY_SERVER_CONNECT
-    session = requests.session()
-    session.mount("https://", CustomHttpAdapter(ctx))
-    return session
-
-
 @router.get("/cnv/acmg/{path:path}")
 async def cnv_acmg(request: Request):
     """Implement searching for ACMG classification for CNVs."""

backend/env.dev

@@ -16,6 +16,7 @@ BACKEND_PREFIX_ANNONARS=http://localhost:3001
 BACKEND_PREFIX_MEHARI=http://localhost:3002
 BACKEND_PREFIX_VIGUNO=http://localhost:3003
 BACKEND_PREFIX_NGINX=http://localhost:3004
+BACKEND_PREFIX_DOTTY=http://localhost:3005
 
 # Access to redis as it runs Docker Compose.
 REDIS_URL=redis://localhost:3030

frontend/src/components/SvDetails/AcmgRating.vue

@@ -94,7 +94,7 @@ const switchCriteria = (
           <h1 title="Automatically determined ACMG class (Richards et al., 2015)">
             {{ calculateAcmgClass }} with score: {{ calculateAcmgScore }}
           </h1>
-          <router-link to="/acmg-docs" target="_blank">
+          <router-link to="/acmg-sv-docs" target="_blank">
             Further documentation <v-icon>mdi-open-in-new</v-icon>
           </router-link>
         </div>