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Adjust to annonars v0.24.0 clinvar server output #154

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holtgrewe opened this issue Oct 18, 2023 · 1 comment · Fixed by #166
Closed
2 tasks done

Adjust to annonars v0.24.0 clinvar server output #154

holtgrewe opened this issue Oct 18, 2023 · 1 comment · Fixed by #166
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enhancement New feature or request
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0.1.0

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holtgrewe commented Oct 18, 2023 •
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Is your feature request related to a problem? Please describe.
Annonars v0.24.0 will have new clinvar data structures to properly represent VCV/RCV structure.

Describe the solution you'd like

  • Adjust the code to the new format everywhere clinvar data is queried (per-variant and per-gene).
  • Also adjust the README.md for download of the new data.

Describe alternatives you've considered
N/A

Additional context
@holtgrewe holtgrewe added the enhancement New feature or request label Oct 18, 2023
@holtgrewe holtgrewe added this to the 0.1.0 milestone Oct 18, 2023
@holtgrewe holtgrewe self-assigned this Oct 18, 2023
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This also fixes the gene variation landscape.

image

holtgrewe added a commit that referenced this issue Oct 18, 2023
@holtgrewe
feat: adjust to annonars v0.24.0 clinvar output (#154)
60b81ee
@holtgrewe holtgrewe mentioned this issue Oct 19, 2023
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@holtgrewe holtgrewe linked a pull request Oct 19, 2023 that will close this issue
feat: adjust to annonars v0.24.0 clinvar output (#154) #166
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holtgrewe added a commit that referenced this issue Oct 19, 2023
@holtgrewe
feat: adjust to annonars v0.24.0 clinvar output (#154) (#166)
08c2374
@varfish-bot varfish-bot mentioned this issue Oct 19, 2023
Merged
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feat: adjust to annonars v0.24.0 clinvar output (#154) bihealth/reev
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