ITS-SV: Use dynamic TimeFrame splitting for GPU vertexer

[mconcas]

• Protections added in DCS DPs processing (Protections added in DCS DPs processing AliceO2Group/AliceO2#10215)
• DPL: fix warning
• DPL: add helper to wrap algorithms
• TRD: Tracker: Add padrow crossing information (TRD: Tracker: Add padrow crossing information AliceO2Group/AliceO2#10229)
• Fix mask of MFTMCHMID
• Add test workflow for analysis
• small fix for collision context tool
• Fix TPC_WORKFLOW_FILTER_DIGITS_OUTSIDE_OF_TF
• Use LOG(alarm) instead of std::cerr
• Calib workflow: fix error messages
• If MFTMCH and MCHMID are enabled, enable MFTMCHMID as well in EventDisplay
• TRD: calibration: vDrift and ExB (TRD: calibration: vDrift and ExB AliceO2Group/AliceO2#10053)
• optionally throttle CCDB logs to infologger
• Demote ccdb query announce and /Returning cached entry/ logging to debug
• IDC deltas always on
• update SCALETRACKS_TPC_TIMEGAIN
• [FOCAL-9] Write decoded ASIC header to tree
• CollisionContext: Option to ensure that a timeframe has at least one collision
• TRD: QC: Add global track id to TrackQC (TRD: QC: Add global track id to TrackQC AliceO2Group/AliceO2#10300)
• DPL: rate limiting
• Optionally truncate TPC digits that fall beyond orbit limit
• Fix: SYNTHETIC and NOISE run types were swapped
• Fit the full candidate with KF (Fit the full candidate with KF AliceO2Group/AliceO2#10271)
• CM Pad-by-Pad option, load pad variations from CCDB, CM corrected digits
• GPU: Fix initialiation of GPU magnetic field if 0-field should be used but magnet current is not exactly 0
• DPL: fix warnings in ASoA.h
• TPC: Add debug option to dump CompressedClusters struct to stdout
• TPC Track Model Decoding: Better cuts to distinguish underflow / overflow
• Make some functions static, fix a typo
• TPC: CTF Skimming should use correct solenoidBz and nHbfPerTf
• TPC CTF Skimming: Fix possible overflow in BC range check
• DPL: avoid copying the TaskName too often
• DPL: fix warnings in histogram registry
• HistogramRegistry: avoid unneded copies and allocations
• HistogramRegistry: avoid dance back and forward with types
• [FT0] Quick fix of errors in SYNTHETIC runs (set DataIsValid flag in sim)
• DPL: fix typo in documentation
• Fix printout in TPCVDriftTglCalibSpec
• Fix SVertexer: vector element ref. used after vector expansion
• Add countsFV0 to LumiInfo as backup for nominal FT0 lumi
• Dummy driver device with no input and dummy output
• Barrel alignment fixes
• FST: Give proper error message when rawAll.cfg missing
• FST: Option to enable / disable QED part
• GPU Workflow: fix configKeyValue to override solenoidBz
• Reduce some debug verbosity
• GPU: Display of magnetic field should create field from GRP if not already loaded
• GPU: Standalone visualization can run without data
• TPC CTF Skimming: Implement eta-cut on unassigned clusters
• TPC: Do not check triggered mode setting if TPC is not read out
• CPV: add dpl ccdb fitcher to digitizer
• [ITS, ITS3] Add first version of ITS3 descriptor in ITS geometry ([ITS, ITS3] Add first version of ITS3 descriptor in ITS geometry AliceO2Group/AliceO2#10289)
• Allow to set the MID HV from CCDB
• TRD: Simplify link stats (TRD: Simplify link stats AliceO2Group/AliceO2#10315)
• Make sure detector CTF header default constructor is called
• TRD fix digit phase comments (TRD fix digit phase comments AliceO2Group/AliceO2#10331)
• ctpdev: scalers reply (ctpdev: scalers reply AliceO2Group/AliceO2#10317)
• DPL: set TimingInfo field accordingly on new Run
• Remove stray GlobalFwdTrackReaderSpec file
• Make the track color configurable in EventDisplay
• TPC Track Model Compression: Store Bz field and max time bin with data
• first version of DCS config proxy
• Second version of TPC DCS Config proxy
• L1phase calib summary histo added; warning fixes
• [FWDMatcher] Protection for invalid BC diff
• ITS DCS parser: add always run number to metadata (ITS DCS parser: add always run number to metadata AliceO2Group/AliceO2#10320)
• [FOCAL-9] Port mapping for pads from QC
• fix in TOF matching (time) to account for integrated times
• Optionally apply BC shift to triggered detectors in CTF decoding
• [EMCAL-841] Fix switched energy and time in cell calibration
• TRD: QC: Enable output for full configuration (TRD: QC: Move root output AliceO2Group/AliceO2#10307)
• FST: Fix problem with NUMA pinning in 4-gpu workflow
• FST: OPTIMIZED_PARALLEL_ASYNC should only be set externally
• Fix TPC Entropy encoder with dictionary from CCDB tree object
• o2-sim: fail hard upon errors during loading cuts from JSON
• Add track size enlargement for EventDisplay screenshots
• Special treatment for shifts of ZDC triggers at BC=0,3563
• Fix TPC CTF IO test
• Update RuntimeError.cxx
• Fix swapped pitch and yaw angles in the AlignParam
• When root-outputs are requested, write also TRD tracklets/digits
• Introduce optional ITS ROF delay in nBC in the AlpideParam
• Account for possible ITS ROF delay in ITS-TPC matching
• account for eventual ITS/MFT ROF bias in vertexing/matching
• Introduce optional global time bias for ITS-TPC refitted time
• Update MCTrack ClassDef
• Make HepMC and native status available for MC gen
• Simplify logic for file output setting of residual aggregator
• Replace CTF_METAFILES_DIR by EPN2EOS_METAFILES_DIR
• ZDC calib: configure meta file and output dirs
• PHOS calib: configure meta files and output dirs
• Fix workflow scripts to pass FST without O2DPG update
• ctpdev: FV0 to lumi (ctpdev: FV0 to lumi AliceO2Group/AliceO2#10349)
• Disable MFT Tracker IR filter for cosmic runs
• Fix MFT tracker for B=0
• add CTP digit writer executable
• Possibility to add custom workflow via ADD_EXTRA_WORKFLOW
• Set Alpide random noise to 10^-8 (was 10^-7)
• Report S,P.vertexer settings only once from pipeline 0
• DPL GUI: avoid crash while I find out why the metrics are not correct
• Fix in creation of alignment object
• Add an end of validity to the default MID HV CCDB object
• In case of alien directory connect to alien://, do not validate in advance
• Make sure readers can read from alien
• FST: Add pipeline option for HMPID
• FST: Fix TIMEFRAME_SHM_LIMIT for raw/tf/ctf reader case
• TPC zs Encoder: fix on the fly ion tail correction
• [OCTRL-731] Use config.Get instead of deprecated GetConfig in AliECS output
• Revert "Fix workflow scripts to pass FST without O2DPG update"
• Fixes for the barrel allignment
• Fix order of alignment objects application
• GPU: TPC TF Cluster Check
• fix filling of eta histo
• Possibility to add EMC recalib for async
• Option to fowards MC tracks from O2-sim to external (DPL) consumer
• fix sim example
• TPC: Adjust DLBZS format to what is implemented in the firmware
• TPC: fix o2-tpc-reco-workflow with input = compressed clusters from CTF and output = ClustersNative
• Add more CRU configuration parameters
• TRD tracking: update default settings
• PHOS calibrations check file path in device init
• TPC gain map using tracks: Perform log transform of Q
• TOF: Add unfied container for parameters on ccdb (TOF: Add unfied container for parameters on ccdb AliceO2Group/AliceO2#10364)
• GPU: Add tuning parameters for AMD MI2xx
• GPU: Automatically select best AMD GPU kernel parameters based on HIP_AMDGPUTARGET
• DPL GUI: improve display when there is a lot of edges
• Make sure calo table is sorted by BC (Make sure calo table is sorted by BC AliceO2Group/AliceO2#10381)
• Report N contributors/ambiguous in p.vertex reader verbose mode
• use cov.matrix eigenvalues for num.derivative deltas
• Optionally gzip mille binary files
• Optionally downscale MP output records in root format
• GPUTRDTrack move getter method to header
• [FOCAL-9] Force writing pad tree at the end of stream
• [EMCAL-830] Options to drop or redirect cells from LED events
• make kine forward channel unique per sim process
• Optionally add extra time error to ITSTPC tracks
• Fix TPC digi time comparison
• DPL GUI: avoid reallocating buffers over and over again
• Add option to quit on successful sending
• switch from degrees to radians, accound Vtx extra error
• Protection against 0 or negative eigenvalues of cov.matrix
• Option to generate params/constraints files w/o processing
• Add cuts on N tracklets/clusters, print seen/acc. stat.
• [EMCAL-830] Stream EMCAL LED events to dedicated ROOT files
• Updated TimeSlotCalibration interface
• MID tracker does not need MagField
• Fix material and thickness of OB CYSS elements
• Fix typos in material definition
• [ITS] Implement ITSBase configurable parameters
• DPL GUI: do not expose getDataJSON
• Avoid using deprecated sprintf
• Please consider the following formatting changes
• DPL: avoid regex recompilation
• DPL: Fix warning
• [EMCAL-798] Add input subspecification to offline calib workflow
• [EMCAL-798] Fix: Argument was not in quotation marks
• DPL: Improve ControlServiceHelpers::parseControl
• DPL: move DeviceConfigInfo::parseConfig to C++17
• TPC IDC aggregator workflow: use 1 proxy for IDCs and SACs
• simple workflow to process ClusterQC
• TPC: adding workflow for integrated cluster currents
• Use new ITS FLPs in raw2digit [O2-3443]
• report volume ID in parames printout
• Write measurement record with pre-sigma constraint
• TPC SCD calib: add configurable params
• Residuals filename contains TFID info
• Always write track references in addition to binned residuals
• Prepare limiting number of processed tracks per TF
• ITS Calibration: small fixes and calculation of mpv (ITS Calibration: small fixes and calculation of mpv AliceO2Group/AliceO2#10401)
• MFT tracks: chi2 per number of degrees of freedom
• Bugfix and cleanup MFT track finder
• tof digitizer reads params from ccdb
• apply delay in tof digit reader
• add MatchTOFParams
• Aply MP2 solution to matrices after loading it
• New features to construct digicontexts
• DPL: factor out non-type dependent code
• DPL GUI: avoid multiple calls to node position
• MFT-MCH refit : Removing remnants of old implementation and adding options (MFT-MCH refit : Removing remnants of old implementation and adding options AliceO2Group/AliceO2#10396)
• [MCH] adapt to variable TF size (for MC) ([MCH] adapt to variable TF size (for MC) AliceO2Group/AliceO2#10399)
• Change name to tpc-aggregator-ft if it is for SACs
• Replace deprecated set-output command in workflows
• TPC residuals: Add possibillity to use more than one input file
• TPCFastTransform: Add possibillity to write splines to file
• TPC: Add option to shift TPC clusters during decoding
• DPL: fix warnings
• TRD: CalibratorVdExB: Fix minimal entries init
• TPC: install TPCFastTransformInit.C (TPC: install TPCFastTransformInit.C AliceO2Group/AliceO2#10440)
• MCTrack proxy: option to pass source PID or to find socketfile
• Log full value of the HMP DP in verbose mode
• Fix status code usage in MCUtils
• [EMCAL-798] Apply gain calibration to cell energies in offline calib
• Add Collisions table version 001
• o2-sim: Generalized vertex sampling
• Move config.macro exec. after eventual ini.params reading
• Fixes for alignment: match any volume by regexp
• ICCs: Add option to select charge type (qMax or qTot)
• ICCs: Adding missing suffix to CMake
• [MCH] added time information to Track class
• [MCH] added unit test for interaction record conversion
• [MCH] fixed clang formatting
• [MCH] added review comments
• [MCH] added back limits header
• Fix copy constructor for TimeSlot
• [FOCAL-10] Basic FOCAL raw decoding workflow
• TPC SCD calib: Ues time stamps for filenames and some fixes for merging slots
• Proper track sampling for residuals extraction
• Track info makes sense only for unbinned residuals
• Multiple fixes for the alignment
• First prototype of strangeness tracking workflow (First prototype of strangeness tracking workflow AliceO2Group/AliceO2#10437)
• Fix clang-tidy reported issues
• TPC fast transform: Add user defined number of knots
• Update CODEOWNERS
• DPL: improve simple sink
• DPL: allow getting all the ConfigParamSpec from a ConfigRegistry
• DPL: improve simple source device
• getNFakeClusters() now starts reading from the first hit
• Ability to use pre-fixed collision vertices in simulation
• remove one print if not verbose mode
• optimizing TOF event time maker
• fix when reading TOF diagnotic
• TPC ICCs/IDCs: fixing completion policy for ICCs
• prototype for the CTP inputs storage in AOD (prototype for the CTP inputs storage in AOD AliceO2Group/AliceO2#10400)
• [EMCAL-798] Add gain calib flag to offline calibrator
• FIT calibration: new features and fixes (FIT calibration: new features and fixes AliceO2Group/AliceO2#10451)
• Fix SCD calib maxTracksPerCalibSlot=-1 option
• add method to get alignable volume by its label
• Change cluster def to common side; bugfix
• Refine gen status code usage
• Get MID HV from CCDB in simulations
• Use recodata + ITS-V0 PV match (Use recodata + ITS-V0 PV match AliceO2Group/AliceO2#10460)
• load mag field from CCDB
• Revert "prototype for the CTP inputs storage in AOD (prototype for the CTP inputs storage in AOD AliceO2Group/AliceO2#10400)"
• [FOCAL-10] Enable pixel mapping in build
• Drop need for DataTakingContext for now
• Workflow for the study of TPC tracks moving effects
• Provide trivial MC engine and application
• improve error message
• [ITS, ITS3] Implement Dead Zones and Carbon Foam for ITS3 Inner Barrel ([ITS, ITS3] Implement Dead Zones and Carbon Foam for ITS3 Inner Barrel AliceO2Group/AliceO2#10477)
• GPU: Fix compiler warning
• TPC: Improve TPC cluster counting tool and add afterglow counting
• FT0 calib&reco update (FT0 calib&reco update AliceO2Group/AliceO2#10480)
• Fix BunchCrossings LUT to hadlde large BC spans
• normalize the propagation of digits along the reconstruction chain
• ITS Calib: trivial fix to s-curve fit
• DPL: drop obsolete example
• DPL: provide helpers to navigate O2 Data Model
• DPL: add helper to check if some Lifetime::Timeframe output is missing
• Require alien token for all https URLs and for alice-ccdb.cern.ch, throw fatal if not present
• CCDB: Add alien token check as proposed by Sandro
• fix typo in alien-token check
• Avoid deprecation warnings
• TPC SCD map creation from unbinned residuals (TPC SCD map creation from unbinned residuals AliceO2Group/AliceO2#10479)
• Optionally apply fixed BC shift to CTP data decoded from CTF
• TPC: Check if all input files are accessible (TPC: Check if all input files are accessible AliceO2Group/AliceO2#10498)
• Change to using Collisions = Collisions_001 (Change to using Collisions = Collisions_001 AliceO2Group/AliceO2#10478)
• Fix in the VDrift selection logic
• Add ITS3-WP1 coordinators as CODEOWNERS of IT3 folder (Add ITS3-WP1 coordinators as CODEOWNERS of IT3 folder AliceO2Group/AliceO2#10481)
• Optional q/pT cutoff for tracks used for TPC Vdrift calibration
• [ITS3, ITS] Add possibility to switch ITS3 version with configKeyValues ([ITS3, ITS] Add possibility to switch ITS3 version with configKeyValues AliceO2Group/AliceO2#10488)
• TPC: cpad function for simple cluster drawing
• Make sure MC particles are ordered by MC collision IDs
• Fix TRD refit LT-integral calculation and material accounting (Fix TRD refit LT-integral calculation and material accounting AliceO2Group/AliceO2#10509)
• GPU: Fix TPC track merging with uneven number of threads
• GPU: Add support for compressed clusters to standalone dump
• GPU: Add cmake option to disable all fast-math and non ieee denormal treatments
• collision version 001 fixup (collision version 001 fixup AliceO2Group/AliceO2#10513)
• QC: Adds IDC0 scale and Draw Overview
• GPU: In case of empty (0-size message) CTF input, assume we have empty date
• GPU: GPUCA_NO_FAST_MATH should also avoid fma contraction
• GPU: Support GPUCA_NO_FAST_MATH also for GPU library in non standalone-compilation
• TPC: Show warning if clusters fail track model decoding
• GPU: Do not auto-detect AMD clang-ocl, since it has compiler problems, and can break O2 compiltion if auto-detected
• GPU: Fix compiler warning
• GPU: Improve ROCm path auto-detection, if not set but /opt/rocm exists, just use it
• TPC: adding number of clusters as type for integration
• ITS: Implement AlpideResponseSimulation, on-the-fly root file generation, and more. (ITS: Implement AlpideResponseSimulation, on-the-fly root file generation, and more. AliceO2Group/AliceO2#10352)
• DPL Analysis: fix unit tests
• CMake: fix FindO2GPU syntax
• DPL: cleanup InputRecord::get
• Fix: revert ITS/MFT cluster dict. hashing to original murmur2 f-n
• GPU: Improve debug output
• GPU: Update OuterTrackParam during inward refit at innermost leg
• GPU: Store OuterParam already after refit of first leg in second to last round
• GPU: When dropping secondary legs, remove attachment of clusters that belong to the primary leg of a different track
• DPL Analysis: use human-readable types in expression errors (DPL Analysis: use human-readable types in expression errors AliceO2Group/AliceO2#10515)
• add passName in DigiParams
• DPL Analysis: simplify Join and update Concat (DPL Analysis: simplify Join and update Concat AliceO2Group/AliceO2#10516)
• GPU: Indent debug output correctly
• GPU: Fix storage of OuterParam if first inward fits aborts early but final inward fit succeeds
• GPU: Fix cluster-attachment leg assignment for CE crossing tracks
• Revert "Use https for alice-ccdb.cern.ch"
• GPU: Fix ROCm path auto-detection
• Optimize St4-5 clustering - preparing comparaison between the 2 algorithms (Optimize St4-5 clustering - preparing comparaison between the 2 algorithms AliceO2Group/AliceO2#10457)
• DPL Analysis: simplify code to parse inputs
• Add metadata to AOD writer inputs (Add metadata to AOD writer inputs AliceO2Group/AliceO2#10531)
• DPL Analysis: initial support for enumerations
• DPL Analysis: avoid calculating the hash multiple times
• DPL: introduce test for DatabasePDG
• Check/fix for wraps in InteracitonRecord arithmetic
• added compatibility with data produced with IB commissioning tools (ITS Calib: compatibility with data produced with IB commissioning tools AliceO2Group/AliceO2#10505)
• Allow usage of additional track information for TPC SCD map creation (Allow usage of additional track information for TPC SCD map creation AliceO2Group/AliceO2#10537)
• [QC-898] Rename RAW channel type into RAWFMQ
• DPL Analysis: correctly account for offset when accessing sliced boolean column
• DPL Analysis: load PDG database on demand
• DPL: fix missing includes
• Include EMCAL and PHOS/CPV in fake CTP readout (Include EMCAL and PHOS/CPV in fake CTP readout AliceO2Group/AliceO2#10544)
• FileFetcher run alien_cp in debug mode
• Optional threshold on fraction or abs.number of failed fetches
• New developments for QED treatment in simulation
• merge and relocate tracking workflows
• TRD: PID: Added Base Classes
• TRD: GPU: added Signal member to GPUTRDTrack_t
• TRD: Tracking: Adding PID capabilities
• AOD: TRD: Add PID information
• AOD: TRD: Add track information
• Fix timerange for Mean Photon Energy
• Kr calibration - normalized gain maps (Kr calibration - normalized gain maps AliceO2Group/AliceO2#9800)
• FT0 reco: time calc default filter parameters are changed
• Temporary remove alpide test
• Improve robustness for ITSRESPONSE location pt. 1
• GPU Display: temporarily disable imgui text rendering, for imgui bump
• DPL GUI: add compatibility with DebugGUI v0.7.0
• DPL: use transparent wrapper for LoadableServicePlugin
• Generic workflow to study tracking results.
• Refine and add utilities for MCGenStatus
• Add CheckVertices macro (ITS: add macro to check seeds AliceO2Group/AliceO2#10555)
• ctp: trigger offsets and config tests (ctp: trigger offsets and config tests AliceO2Group/AliceO2#10567)
• [FOCAL-10] Add option to process multiple files in pad rootifier
• add electronic noise and time response
• GPU: Workaround disabling fast-math on AMD GPUs, since it crashes
• Bugfix minimal number of ROFs per MFT tracker thread
• DPL GUI: Try to get newly deprecated code to work
• Update FrameworkGUIDebugger.cxx
• Drop direct dependency on libPhysics
• Fix compiler warnings
• GPU: Fix setting of GPU device ID from ROCR_VISIBLE_DEVICES without explicit NUMA setting of sync reco
• Discard TRD tracks with bad quality (Discard TRD tracks with bad quality AliceO2Group/AliceO2#10540)
• Consistently use the systematics alignment variance (Consistently use the systematics alignment variance AliceO2Group/AliceO2#10574)
• CCDBManager: Set condition-not-after in constructor when env variable is set
• Fix detection of CCDB production server in CcdbApi
• DPL Analysis: add a static constexpr function to check if a Join contains certain component (DPL Analysis: add a static constexpr function to check if a Join contains certain component AliceO2Group/AliceO2#10578)
• GPU QA: Add debug output
• GPU: Use average eta estimate for initial ZOffset during track seeding
• GPU: Assume average eta for vertex time estimate for looping tracks not coming close to the beam line
• GPU: Improve vertex time estimation
• Improve error message, add one possible cause of failure that caused the crash, which was not mentioned before
• Fix leftover debug message
• [ITS3, ITS] Modify the description of carbon foam ([ITS3, ITS] Modify the description of carbon foam AliceO2Group/AliceO2#10520)
• Update track selection for track interpolation
• Macro for creating average distortion maps
• Skip data before TF start is fount in detect-tf0 mode
• Misc. fixes for the pvertexer.
• make track print methods to work on gpu
• fixes in log messages
• TPC refit of TrackParCof resets q/pt err.to 100/1000% for large/small q/pTs
• o2-sim: Support for low energy neutron transport (Geant4 and Fluka) (o2-sim: Support for low energy neutron transport (Geant4 and Fluka) AliceO2Group/AliceO2#10585)
• Another fix for CCDB server detection
• Upgrade MFT track finder
• Default settings for MFT track finder
• [MFTAssessment] Add Histograms for fake tracks
• activate time dispersion and time clustering in MC
• [FOCAL-10] Fixes for merging pad and pixel data
• [FOCAL-10] Fixes in EventReader
• ITS: Improve seeding with low multiplicity events
• Add meanvertex pull from ccdb
• Fix parameter not propagated
• Use reusable workflow for clean-test
• Update README for TPC SCD calib
• Add more cut parameters for track selection
• treat MC QED background labels as not valid
• [FOCAL-10] Skip empty HBFs in decoding
• [EMCAL-565] Add energy interval above 4GeV for bad channel calib
• GPU TPC: For constraining track time0, use all clusters, not only those that were not reject in current refit round
• GPU TPC: Fix constraining of TPC track time0
• GPU TPC: Constrain time window to compute deltaFwd / deltaBwd to the TPC drift time
• GPU TPC: Track with eta ~ 0 with clusters removed can increase the time range between first and last cluster, thus reconstrain time0 when storing
• Change lifetime::timeframe to sporadic in several places
• GPU QA: Drop obsolete csvDump function
• GPU: Standalone build should create ROOT dictionaries if ROOT is present
• GPU: Add dictionary for GPUTPCGMMergedTrackHit
• GPU: Improve GPUROOTDump, allow output to multiple branches of a tree
• GPU QA: Add option to dump clusters and tracks to ROOT file
• Calib Workflow: Fix TPC SAC workflow without IDCs
• [FOCAL-11] Provide simple base analysis task for TB events
• ITS: Fix crash due to initalised vertex on some OSs
• GPU TPC: Fix sign of maxDriftTime when computing time window constraint
• revert accidentally enable debug output of vertexer
• Account for pre/post trigger pileup in TRD timing estimate
• Set nominal TRD track time error to 5ns
• Make TOF matching time tolerance nSigma configurable (def=4, was 30)
• Fix RDH error bits decoding (Fix RDH error bits decoding AliceO2Group/AliceO2#10577)
• [FDD] Now propagate avg time for all the BCs in Rec ([FDD] Now propagate avg time for all the BCs in Rec  AliceO2Group/AliceO2#10545)
• TRD raw reader improve RDH check
• ITS: Add protection from bogus vtx coordinate (ITS: Add protection from bogus vtx coordinate AliceO2Group/AliceO2#10600)
• Separate cluster attachment chi2 from total chi2 selections (Separate cluster attachment chi2 from total chi2 selections AliceO2Group/AliceO2#10592)
• DPL: add profiling policy for message size (DPL: add profiling policy for message size AliceO2Group/AliceO2#10613)
• DPL: attempt at hiding boost deprecation message (DPL: attempt at hiding boost deprecation message AliceO2Group/AliceO2#10614)
• Revert "Add metadata to AOD writer inputs (Add metadata to AOD writer inputs AliceO2Group/AliceO2#10531)"
• Fix outlier rejection for B=0 data
• DPL: translate FairLogger's detail to Infologger's debug (DPL: translate FairLogger's detail to Infologger's debug AliceO2Group/AliceO2#10615)
• MCH: properly configure the slot finalization (MCH: properly configure the slot finalization AliceO2Group/AliceO2#10566)
• Avoid alien check being confused by IgProf
• Add option to enable -ftime-trace
• Simplify thread safety options
• DPL: use formatter for enum Lifetime
• DPL GUI: display device inputs again
• TPC SAC: Changing name of output
• TPC IDC/SAC: Remove unneeded functions
• DPL: Make sure that DPL proxy ready fast channels fast-enough in multi-channel setup
• Small explanation on boxgen
• Fix deprecation warning
• Accounting for residuals per TF
• Find voxel bin for TPC cluster position, not track interpolation position
• Optionally apply correction map to cluster residuals
• Example how to use MCTrackNavigator in kinematics analysis
• Fix warning
• [FOCAL-11] Drop empty timeframes in reader
• TOF: Adding workflow for integrated TOF currents (TOF: Adding workflow for integrated TOF currents AliceO2Group/AliceO2#10608)
• DPL Analysis: fix enumerations
• Fix warning
• TPC IDC: optimizing outlier filtering
• Possibility to set MeanVtx calib parameter from outside
• [ITS3] Fix digitization and clusterization and implement proper transformations for ITS3 ([ITS3] Fix digitization and clusterization and implement proper transformations for ITS3 AliceO2Group/AliceO2#10607)
• DPL: have separate include for RootMessageContext
• [FOCAL-10, FOCAL-11] Fixes in pixel decoding
• Revert "Default settings for MFT track finder"
• Revert "Upgrade MFT track finder"
• Fix typo in socket config preventing o2sim_mctracks_proxy to work
• ITS-digi: Fatalise if response file not found
• Update RunTypes for 2 new calib.types
• DPL: Add Metric which is 1 while processing
• Flag to allow duplicate processing
• Create DCAFitter under ./Common (Create DCAFitter under ./Common AliceO2Group/AliceO2#10644)
• Update clean-test.yml
• Complain if more than output route
• DPL: add check for missing outputs
• Introduce a StreamContext and extend the DataProcessorContext
• Attempt at making it reliable
• AOD stores tracks parameters at calorimeters (AOD stores tracks parameters at calorimeters AliceO2Group/AliceO2#10611)
• Introduce RDHv7 and related changes for rec/sim
• Adapt ITS/MFT raw decoding and encoding to RDHv7 and no-padding
• Temporary restore setNewFormat method to avoid conflict with QC
• add DCAFitter dedicated library
• Framework: Add TRD Pattern as dynamic columns
• new structure to handle MCH processing errors
• Fix in detection of the CRU page end for RDHv7 ITS data
• Upgrade MFT track finder
• Default settings for MFT track finder
• [MFT] Reduce MaxRPhiBins to minimize memory size reduce `o2::mft::constants::index_table::MaxRPhiBins' to accomodate default MFT tracking parameters.
• [EMCAL-830] Handling of MC labels
• GPU TPC: Accept RDH >= 6 for TPC GPU raw decoding
• GPU TPC: Add hitSearchArea2 parameter
• Calib workflow: This is not a fatal error, simply there won't be any input
• Calib Workflow: Fix workflow when TIMEFRAME_SHM_LIMIT is not set
• Request subspec 1 for EMC decoder in raw->AOD mode
• DPL: fix warnings
• MCH: add bpackets output in calibrator (MCH: add bpackets output in calibrator AliceO2Group/AliceO2#10653)
• Add TTree aliases for scd map results
• Add vDrift calibration
• DPL: Simplify didReceiveData()
• [O2-3142] DPL: fire uv_timer in smaller intervals
• DPL: try keeping the average timer period duration as requested regardless jitter
• DPL: rely only on uv_timer to decide when to create timer inputs
• DPL: Use std::vector instead of std::set for firedTimers
• DPL: set the requested uv_timer period just once
• Changes for CRU suppression of zeroes
• DPL: drop RawBufferContext
• CODEOWNERS: Fix ITS3 directory
• TPC Entropy Encoder: Use correct getter for max drift time
• dpl-workflow: add writers for EMC, CPV, CTP, PHS
• Add missing include
• Remove unused file
• dpl-workflow: Add parameter WORKFLOW_DETECTORS_USE_GLOBAL_READER
• Add --onlyDet option to raw-file-reader-workflow
• FV0: BugFix: Fix inverted MC argument in digit reader
• MID: Add setting for digit tree name, and use MIDROFRecords for ROF record branch to have the same name as when the simulation creates the digits file
• dpl-workflow: add some readers / writers needed for QC
• MCH: Bugfix: runDataProcessing must be included after customize funcitons
• TRD: Add standalone digit reader workflow
• dpl-workfow: add more readers/writers needed for QC in split dpl-workflow
• fix for decoding unpadded ITS/MFT data with RDHv7
• Allow map extraction for B=0 data
• dpl-workflow: Use --onlyDet option for raw file reader
• ITS-SV: fix aggressive rounding in determinant (ITS-SV: fix aggressive rounding in determinant AliceO2Group/AliceO2#10668)
• added correct counting of total number of strobes in Norm mode
• fix command line option for o2-mch-digits-writer-workflow
• TRD: allow compilation w/o ONNXRuntime
• Remove DCAFitter from DetectorsVertexing (Remove DCAFitter from DetectorsVertexing AliceO2Group/AliceO2#10689)
• GPU: Pass correct GCC toolchain to hipcc, since autodetection seems not to work
• add MCH preclusters reader/writer workflows
• Improve cluster and track filter
• DPL: make adding distsubtimeframe & co stable
• FT0/FV0/TPC: adding workflows for integrated currents (FT0/FV0/TPC: adding workflows for integrated currents AliceO2Group/AliceO2#10663)
• Fix race condition when creating a folder on mac
• FT0 reco: filter for event container and amp container is suppressed
• Add drift time offset to VDrift calibration object
• STDERR monitor: filter TInterpreter warnings
• More equivalency declarations (More equivalency declarations AliceO2Group/AliceO2#10694)
• Sim evalmat for Run5 modules
• dpl-workflow: Add optional TOF digit writer/reader
• TOF: Bugfix: tof-reco-workflow should be able to write digits for all input types but digits
• TOF: Rename tof-digit-writer-workflow, since it uses the DigitWritterSplitterWorkflow, not the DigitWritterWorkflow, which is a bit confusing
• dpl-workflow: Add optional readers for MCH clusterdigits and preclusterdigits
• uniformize MCH digits i/o for data and MC (uniformize MCH digits i/o for data and MC AliceO2Group/AliceO2#10697)
• Adding protections needed for QC
• CMake: MCHWorkflow lib is not needed for CTF I/O.
• Update of datamodel-doc (Update of datamodel-doc AliceO2Group/AliceO2#10675)
• use default MCH cluster resolution
• Add some info to the Error mesage
• Optimize calorimeter energy aggregation in EventDisplay
• Introduce helper function to load MClabels from a TTree/TFile
• Fix MeanVertex moving average time assignment
• DPL: demoting warning message for now
• Update TRD codeowners
• [MFT] Move static arrays to be initialized before the processing starts ([MFT] Move static arrays to be initialized before the processing starts AliceO2Group/AliceO2#10665)
• calib-workflow: If EPNSYNCMODE is not set, don't try to connect to FLPs, since it floods the CERN DNS with bogus querries
• dpl-workflow: Add math_min macro
• dpl-workflow: send TOF digits only unconditionally if ROOT output was requested
• Fix missing variable initialization
• Fix length check
• TRD MC->raw uses default RDH unless overridden
• tof-reco-workflow: If input are upstream digits not from a ROOT file, we max actually write them to a ROOT file
• Better memory handling for sparse pp
• ITS3: Base: Make ALPIDE pixel size configurable (ITS3: Base: Make ALPIDE pixel size configurable AliceO2Group/AliceO2#10690)
• ITS3: Sim: Fix calculation of sensor width
• DPL: add DataAllocator::cookDeadBeef method
• GPU: Add printout of HIP version to CMake
• Demote to warning the negative Chi2 log
• Remove unused includes (Remove unused includes AliceO2Group/AliceO2#10714)
• Adding script to load functions, and possibility to add more wf
• Increase TRD dead time from 0.2 to 11 us
• dpl-workflow: Don't scale up explicitly set process multiplicities with GEN_TOPO_AUTOSCALE_PROCESSES
• Generalize ZDC fast sim to include proton ML models
• Remove sync_misaligned, modernise sync (Remove sync_misaligned, modernise sync AliceO2Group/AliceO2#10730)
• TPC interpolation with additional ITS-TPC tracks
• add initial and moved TPC cluster info to output tree
• add MCH errors merger, reader and writer (add MCH errors merger, reader and writer AliceO2Group/AliceO2#10716)
• [MFT] Use residual instead of measurement to make Mille records ([MFT] Use residual instead of measurement to make Mille records AliceO2Group/AliceO2#10726)
• Avoid segfault if no ITS-TPC tracks available, but additional ITS-TPC tracks are still requested (Fix in stopping track accumulation when stat is ok AliceO2Group/AliceO2#10733)
• Copy CompressorTaskOld.cxx
• TOF: use DPL properly for Compressor
• Simplification + allow either ZN or ZP as fast sim
• Fix sector assignment for neutron fast hit creation
• Option to seed digit context creation in SimReader
• Install average map creation macro (Install average map creation macro AliceO2Group/AliceO2#10736)
• Update MFT codeowner
• DPL: specify balancing in the CompletionPolicy
• Reset counter at new file
• ZDC: more channel fixes
• ITS3: Base: SegmentationSuperAlpide: Add Constructor for ROOT macros (ITS3: Base: SegmentationSuperAlpide: Add Constructor for ROOT macros AliceO2Group/AliceO2#10724)
• Once aggregator stat. is ok, just ignore the data
• MFTTracker: fix initialization of precalculated arrays
• gen_topo_helper_functions.sh is sourced from setenv.sh (gen_topo_helper_functions.sh is sourced from setenv.sh AliceO2Group/AliceO2#10750)
• TPC: Adding streamer for FastTransform in reconstruction (TPC: Adding streamer for FastTransform in reconstruction AliceO2Group/AliceO2#10739)
• Augment cov.matrix optionally preserving correlations
• Configurable param for tracks ad hoc corrections/manipulations
• optionally expand TPC covariance matrix during global tracking
• Postfix for PR#10753: forgotten commig tested locally
• Add vim session file to gitignore
• Keep track of the index of the merged MID column data
• Use MID ColumnDataHandler in the digits merger
• Add function allowing to use the merger without the MC labels
• workflow: Avoid overwriting GEN_TOPO_MYDIR (workflow: Avoid overwriting GEN_TOPO_MYDIR AliceO2Group/AliceO2#10752)
• Fix typo in raw data parser for RDHv7
• TPC: Adding compression of integrated clusters
• Use mch-sim-digits-reader for now
• Add default copy assignment to prevent compiler warnings
• MCH: fixed memory leak in new clustering
• Add T0 offset correction for average distortion maps (Add T0 offset correction for average distortion maps AliceO2Group/AliceO2#10735)
• DPL: use primitive types for Variant::UInt64 types
• DPL: add button to profile allocations on macOS
• Fix metadata messages in AOD
• its-dcs-parser-workflow: added parsing of the end of string marker and recognition of missing staves (its-dcs-parser-workflow: adapted to new EOR data format AliceO2Group/AliceO2#10734)
• DPL: Avoid exposing boost / DeviceInfo in metrics
• add missing include (add missing include AliceO2Group/AliceO2#10761)
• TPC Transform: Add TransformYZ method
• TPC Transform: remove TOF correction which was incorrectly applied in slow transform (anyway applied at the end)
• GPU: Replace plenty of 250cm constants by global TPCLength constant
• Add ShiftZ function also to slice tracker trackParam
• GPU TPC: Shift TPC track to most probably Z after fitting 8 hits
• GPU: Streamline and homogenize GPU CONSTEXPR
• GPU Display: fix compiler warnings
• GPU: Fix comments describing variables
• GPU: Fix debug output
• GPU: Use -O0 for standalone debug builds
• GPU TPC: Fix backward seed search not picking up last track hit if forward search was empty leading to incorrect lastTrackletRow
• Suppress bogus GCC -Wuninitialized warning
• Optionally bias TPC params on source level
• Add missing formatter for RDHV7 parser
• Exclude negative matching chi2 tracks
• ITS/MFT RDHv7 aligment is changed to 16 bytes
• DPL: add callback when exit was requested
• TPC Transform: Add TransformXYZ to correctionMapsHelper
• GPU TPC: Add GetPropagatedYZ method to slice tracker trackParam
• Fix typo (eta sign) in track extrapolation to PHOS
• Make mdUpdate.py executable for datamodel doc workflow
• TOF: extend parameter containers
• Retrieve number of orbits in TF from GRP (Retrieve number of orbits in TF from GRP AliceO2Group/AliceO2#10721)
• GPU TPC: Apply distortion correction during seeding
• GPU: Fix incorrect sign of b field in GetPropagatedXYZ, and treat negative cosPhi correctly
• GPU: Throw an error if attempting to create GPUReconstruction with DEBUG_STREAMER enabled, instead of simply segfaulting
• Match all specs when writing decoded MID digits (Match all specs when writing decoded MID digits AliceO2Group/AliceO2#10774)
• Fix sign of saved MC track
• DPL GUI: memory profiling button for devices too
• Use pipefail option in dpl-workflow.sh
• DPL: fix warnings
• DPL: improve reporting of why the loop was triggered
• workflows: check sourcing of all scripts
• ITS3: Re-enable tracking workflow (ITS3: Re-enable tracking workflow AliceO2Group/AliceO2#10768)
• MCH: make clusters not written by default in reco-workflow (MCH: add option to disable writing of all clusters AliceO2Group/AliceO2#10725)
• MCH: migrate digit I/O to IO and DevIO libs
• dpl-workflow: fix autoscaling when TOTAL_N_PIPELINES is 0 or empty
• dpl-workflow: fix typo
• calib workflow: ccdb populator should use DPL_DONT_DROP_OLD_TIMESLICE=1
• MCH: decrease default logging of new clustering
• MCH: add (empty) errorMap for new clustering
• Override TPC negative DeltaTBwd to 0
• DPL: do not have static string inline
• DPL: introduce typesafe API for callbacks
• DPL Analysis: move static out of line
• Extra fixes for ITS/MFT decoding with RDHv7
• MCH: add RDHv7 in showRDHs utility function
• Fix the RDH V7
• Fix - the generic RDH
• Modified codes in Detector/ITSMFT/MFT/condition to load dead map information from DCS
• added pulse length scan + new cdw version + new run types
• added run type for VCASN tuning with back bias
• TPC: Update data processing to generic RDH
• bulk generation of screenshots (bulk generation of screenshots AliceO2Group/AliceO2#10706)
• DPL: cleanup unused variable in CMakeLists
• Introduce GpuTimeFramePartition
• Add checkSize feature
• Add missing allocations
• Add loading clusters
• Add tracer for GPU
• Add async memory loading
• Remove redunant namespace
• Improve flexibility for smaller GPUs (4 dev)
• Add multi-rof trackleter kernel
• WIP: add rof per block logic
• Add buffer recording
• Add async thrust calls
• Add block debug print function
• Checkpointing
• Somenthing moves
• checkpoint
• CP
• cp
• CP
• godo
• asdf
• CP
• Threads stepping on each others, to be fixed
• CP
• cp