Modularization of sagelib: Break out a separate package sagemath-standard-no-symbolics #32601

mkoeppe · 2021-09-30T19:54:42Z

This is a subset distribution that includes all of sagemath-standard except for sage.symbolic and modules that use that.

As preparation, we remove gratuitous module-level imports from sage.symbolic, sage.functions, sage.calculus which block this modularization.

either by making these imports lazy_import
or by moving module-level imports to individual methods
or by replacing unnecessary uses of symbolic functions
or by using .abc (see Meta-ticket: Replace is_Class functions, create abstract base classes to enable modularization #32414)
The command git grep -E '^from.*sage[.](symbolic|calculus|functions).*import' helps to find these imports.
Remove unnecessary uses of SR and symbolic functions in sage.algebras, sage.combinat #32411/Remove unnecessary uses of SR and symbolic functions in sage.categories, sage.coding #32413/Remove unnecessary uses of symbolic functions in sage.tensor.modules #32415/Remove unnecessary uses of SR and symbolic functions in sage.geometry (except .hyperbolic_space) #32416: Remove unnecessary uses of SR and symbolic functions
sage.structure, sage.sets: Remove hard dependencies on the symbolic ring / polynomial rings #32599: sage.structure, sage.sets: Remove hard dependencies on the symbolic ring / polynomial rings
sage.modules, sage.matrix: Remove import-time dependencies on the symbolic ring #32593: sage.modules, sage.matrix: Remove import-time dependencies on the symbolic ring
sage.tensor.modules: remove dependency on sage.manifolds #32708: sage.tensor.modules: remove dependency on sage.manifolds
sage.tensor.modules: make doctests involving SR optional #32712 sage.tensor.modules: make doctests involving SR optional
Move sage.functions.other.sqrt to sage.misc.functional #32717: Remove use of sage.functions.other.sqrt (outside of sage.symbolic, sage.functions, sage.manifolds)
Avoid ceil, floor from sage.functions.other in non-symbolic uses #32731: Avoid ceil, floor from sage.functions.other in non-symbolic uses
sage.functions.log.log: Move to sage.misc.functional #32794: sage.functions.log.log: Move to sage.misc.functional
sage.matrix: Modularization fixes after #33159 #33392: sage.matrix: Modularization fixes after wrong result solving equation system with symbolic matrix #33159
Replace "... is SR" by isinstance(..., sage.rings.abc.SymbolicRing) to handle symbolic subrings #32724: Replace ... is SR by isinstance(..., sage.rings.abc.SymbolicRing) to handle symbolic subrings
Remove or tag uses of SR and symbolic functions in combinat, categories, etc. #32609 Remove more unnecessary uses of SR and symbolic functions in sage.combinat
Removing remaining uses of is_CallableSymbolicExpression #34215 Removing remaining uses of is_CallableSymbolicExpression
sage.combinat.finite_state_machine: Remove use of "var" #34217 sage.combinat.finite_state_machine: Remove use of "var"
Methods __round__, __trunc__, __floor__, __ceil__ #25827: Methods __round__, __trunc__, __floor__, __ceil__
Remove module-level imports from sage.symbolic etc. (outside of sage.symbolic, sage.calculus etc.) #32718: Remove module-level imports from sage.symbolic etc. (outside of sage.symbolic, sage.calculus etc.)
Remove abuse of predefined x in doctests #32721: Remove abuse of predefined x in doctests
sage.categories.classical_crystals: Remove use of sage.symbolic #33673: sage.categories.classical_crystals: Remove use of sage.symbolic
sage.combinat.root_system.coxeter_type: Replace module-level import of SR #33674: sage.combinat.root_system.coxeter_type: Replace module-level import of SR

To test:

./bootstrap && ./configure && make build && ./sage -sh -c '(cd pkgs/sagemath-standard-no-symbolics && SAGE_NUM_THREADS=16 tox -v -v -v -e sagepython-sagewheels-nopypi)'

See also:

Modularization of sagelib: Break out separate package sagemath-symbolics #31695 Modularization of sagelib: Break out separate package sagemath-symbolics

Depends on #34547
Depends on #16522
Depends on #34855

CC: @kliem @egourgoulhon @tobiasdiez @anneschilling

Component: refactoring

Issue created by migration from https://trac.sagemath.org/ticket/32601

The text was updated successfully, but these errors were encountered:

mkoeppe · 2021-10-02T00:50:24Z

Changed dependencies from #29865 to #29865, #32599, #32593

mkoeppe · 2021-10-02T01:56:38Z

Changed dependencies from #29865, #32599, #32593 to #32575, #29865, #32599, #32593

mkoeppe · 2021-10-02T02:00:02Z

Changed dependencies from #32575, #29865, #32599, #32593 to #32575, #32442, #29865, #32599, #32593

mkoeppe · 2021-10-02T02:15:31Z

Branch: u/mkoeppe/modularization_of_sagelib__break_out_a_separate_package_sagemath_standard_no_symbolics

mkoeppe · 2021-10-02T05:20:08Z

Last 10 new commits:

`adae38e`	`trac 32575: Sphinx's install-requires.txt: allow version 4.2`
`1131c86`	`Merge #32575`
`8af6041`	`Merge tag '9.5.beta2' into t/32442/__configure__make___with_sage_venv_the_default`
`b3f7d34`	`.gitignore: Add /venv`
`fc4b641`	`configure.ac: Remove conveniene symlinks before (re)creating them`
`8bcbf1d`	`Makefile (distclean): Remove convenience symlinks prefix, venv`
`dcb4a08`	`configure.ac: Indicate default in help string for --with-sage-venv`
`9a63841`	`Merge #32442`
`934fc6b`	`src/setup.cfg.m4, src/pyproject.toml.m4: Add memory_allocator`
`89bb042`	`pkgs/sagemath-standard-no-symbolics: Fixup`

mkoeppe · 2021-10-02T05:20:08Z

Commit: 89bb042

mkoeppe · 2021-10-02T05:20:08Z

Changed dependencies from #32575, #32442, #29865, #32599, #32593 to #32575, #32442, #29865, #32599, #32593, #32608

sagetrac-git · 2021-10-02T05:45:23Z

Branch pushed to git repo; I updated commit sha1. New commits:

`80baf7b`	`sage.{dynamics,geometry,interfaces}.all: Use lazy_import for imports from modules not in sagemath-standard-no-symbolics`

sagetrac-git · 2021-10-02T05:45:23Z

Changed commit from 89bb042 to 80baf7b

mkoeppe · 2021-10-02T15:35:42Z

comment:8

    from sage.quadratic_forms.genera.genus import genera
  File "/Users/mkoeppe/s/sage/sage-rebasing/worktree-gcc11/pkgs/sagemath-standard-no-symbolics/.tox/python-sagewheels-nopypi/lib/python3.9/site-packages/sage/quadratic_forms/genera/genus.py", line 35, in <module>
    from sage.functions.gamma import gamma
ModuleNotFoundError: No module named 'sage.functions'

mkoeppe · 2021-10-17T19:39:53Z

Changed dependencies from #32575, #32442, #29865, #32599, #32593, #32608 to #32575, #32442, #29865, #32599, #32593, #32608, #32708

egourgoulhon · 2021-10-18T20:19:14Z

Changed dependencies from #32575, #32442, #29865, #32599, #32593, #32608, #32708 to #32575, #32442, #29865, #32599, #32593, #32608, #32708, #32712

mkoeppe · 2021-10-18T21:41:49Z

Changed dependencies from #32575, #32442, #29865, #32599, #32593, #32608, #32708, #32712 to #32575, #32442, #29865, #32599, #32593, #32608, #32708, #32712, #32665, #32619

sagetrac-git · 2021-10-18T21:42:01Z

Branch pushed to git repo; I updated commit sha1. Last 10 new commits:

`b484d51`	`src/sage/symbolic/callable.py: Fixup`
`fad87c0`	`Expression.is_callable: New`
`4bc059b`	`src/sage/ext/fast_callable.pyx: Remove use of is_CallableSymbolicExpression`
`8624925`	`src/sage/symbolic/ring.pyx: Update doctest output with deprecation warning`
`37da733`	`src/sage/sets/condition_set.py: Remove use of is_CallableSymbolicExpression`
`80a8f9e`	`sage.plot: Remove use of is_CallableSymbolicExpression, is_SymbolicEquation`
`a287531`	`src/sage/schemes/elliptic_curves/constructor.py: Remove use of SR, is_SymbolicEquation; add test for symbolic input`
`c9861d1`	`src/sage/interfaces/qepcad.py: Remove use of is_SymbolicEquation`
`341337a`	`src/sage/ext/fast_callable.pyx: Remove use of is_SymbolicVariable`
`2c02ba9`	`Merge #32665`

sagetrac-git · 2021-10-18T21:42:01Z

Changed commit from 80baf7b to 2c02ba9

sagetrac-git · 2021-10-18T23:04:06Z

Branch pushed to git repo; I updated commit sha1. New commits:

`e9fc48d`	`Merge tag '9.5.beta3' into t/29865/t/29865-modularizarion-sage-objects`
`f79f0f8`	`pkgs/sagemath-objects/setup.py: On sdist or egg_info, do not run find_python_sources`
`9600217`	`pkgs/sagemath-objects/tox.ini: passenv SAGE_NUM_THREADS*`
`6bd807b`	`pkgs/sagemath-categories/tox.ini: passenv SAGE_NUM_THREADS*`
`c60d2d4`	`Merge #29865`
`c38d3d6`	`src/requirements.txt.m4: Add memory_allocator`

sagetrac-git · 2021-10-18T23:04:06Z

Changed commit from 2c02ba9 to c38d3d6

sagetrac-git · 2021-10-18T23:11:08Z

Changed commit from c38d3d6 to efb68ff

sagetrac-git · 2022-09-26T02:21:59Z

Branch pushed to git repo; I updated commit sha1. New commits:

`d5f9cf5`	`Merge tag '9.8.beta0' into t/32601/modularization_of_sagelib__break_out_a_separate_package_sagemath_standard_no_symbolics`

sagetrac-git · 2022-11-15T07:15:47Z

Branch pushed to git repo; I updated commit sha1. New commits:

`9de7a1a`	`Merge tag '9.8.beta3' into t/32601/modularization_of_sagelib__break_out_a_separate_package_sagemath_standard_no_symbolics`

sagetrac-git · 2022-11-15T07:15:47Z

Changed commit from d5f9cf5 to 9de7a1a

sagetrac-git · 2022-12-06T21:33:06Z

Changed commit from 9de7a1a to c4425da

sagetrac-git · 2022-12-06T21:33:06Z

Branch pushed to git repo; I updated commit sha1. New commits:

`c4425da`	`Merge tag '9.8.beta4' into t/32601/modularization_of_sagelib__break_out_a_separate_package_sagemath_standard_no_symbolics`

mkoeppe · 2022-12-06T21:40:45Z

Changed dependencies from #32913 to none

sagetrac-git · 2022-12-06T22:48:19Z

Branch pushed to git repo; I updated commit sha1. New commits:

`b102b12`	`pkgs/sagemath-standard-no-symbolics: Update`

sagetrac-git · 2022-12-06T22:48:19Z

Changed commit from c4425da to b102b12

sagetrac-git · 2022-12-18T06:54:57Z

Changed commit from b102b12 to cf6b1fb

sagetrac-git · 2022-12-18T06:54:57Z

Branch pushed to git repo; I updated commit sha1. New commits:

`b82d660`	`Merge tag '9.8.beta5' into t/32601/modularization_of_sagelib__break_out_a_separate_package_sagemath_standard_no_symbolics`
`cf6b1fb`	`Fix imports`

sagetrac-git · 2022-12-18T08:00:53Z

Branch pushed to git repo; I updated commit sha1. New commits:

`0810d7a`	`Fix imports`
`2d7dd53`	`src/sage/all_cmdline.py: Do not use lazy_import for predefined x`

sagetrac-git · 2022-12-18T08:00:53Z

Changed commit from cf6b1fb to 2d7dd53

sagetrac-git · 2022-12-18T08:09:50Z

Branch pushed to git repo; I updated commit sha1. New commits:

`bd534cb`	`pkgs/sagemath-standard-no-symbolics/sage_setup: Remove`

sagetrac-git · 2022-12-18T08:09:50Z

Changed commit from 2d7dd53 to bd534cb

sagetrac-git · 2022-12-18T08:26:55Z

Changed commit from bd534cb to 6b1c674

sagetrac-git · 2022-12-18T08:26:55Z

Branch pushed to git repo; I updated commit sha1. New commits:

`6b1c674`	`Fix imports`

sagetrac-git · 2022-12-18T19:00:32Z

Branch pushed to git repo; I updated commit sha1. New commits:

`e426400`	`Fix imports`

sagetrac-git · 2022-12-18T19:00:32Z

Changed commit from 6b1c674 to e426400

mkoeppe · 2022-12-18T20:54:53Z

Dependencies: #34547, #16522

sagetrac-git · 2022-12-18T21:00:01Z

Branch pushed to git repo; I updated commit sha1. New commits:

`250da03`	`trac 34547: use lazy imports in much of sage.interfaces.all`
`9566546`	`trac 34547: remove two "import sage.interfaces.all" lines`
`5789608`	`Merge #34547`
`a29a25d`	`trac 16522: introduce debugging routine to access LazyImport attributes and a routine to clean namespaces of misconfigured LazyImport objects`
`1fa627b`	`clean sage.all and user_globals upon initialization`
`6e384f5`	`src/sage/misc/lazy_import.pyx: Codestyle/markup fixes`
`4acb9d7`	`src/sage/misc/lazy_import.pyx (clean_namespace): Default for namespace like lazy_import`
`05ea54e`	`src/sage/misc/lazy_import.pyx: Codestyle fixes`
`9837dec`	Change order of cases in `Partitions` to put cheaper tests first
`7f1da65`	`Merge #16522`

sagetrac-git · 2022-12-18T21:00:01Z

Changed commit from e426400 to 7f1da65

mkoeppe · 2022-12-19T02:52:14Z

Changed dependencies from #34547, #16522 to #34547, #16522, #34855

sagetrac-git · 2022-12-19T03:18:36Z

Branch pushed to git repo; I updated commit sha1. Last 10 new commits:

`2f4b053`	`pkgs/sagemath-standard/setup.py: Run finder also for sdist, egg_info, dist_info`
`00deebe`	`pkgs/sagemath-objects/setup.py: Run finder also for sdist, egg_info, dist_info`
`39bd748`	`src/sage/dynamics/arithmetic_dynamics/projective_ds.py: Remove unused import of typing_extensions`
`e229436`	`Merge #34859`
`2b39b3d`	`Merge #34858`
`c59622a`	`build/pkgs/sagemath*/spkg-src: Use build`
`7fc93d0`	`build/pkgs/sagemath*/spkg-src: Use --skip-dependency-check`
`4940db4`	`build/make/Makefile.in: Add targets SPKG-src for script packages`
`573fcfd`	`build/make/Makefile.in: Move targets pypi-sdists, wheel, pypi-wheels here; use SPKG-sdist targets`
`8039865`	`Merge #34855`

sagetrac-git · 2022-12-19T03:18:36Z

Changed commit from 7f1da65 to 8039865

mkoeppe · 2023-02-17T05:06:53Z

Modularization of sagelib: Break out a separate package sagemath-standard-no-symbolics #32601

Modularization of sagelib: Break out a separate package sagemath-standard-no-symbolics #32601

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