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pango designation v1.24
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@AngieHinrichs AngieHinrichs released this 19 Jan 04:24
· 697 commits to master since this release
v1.24
6138380

Release notes

fb96d0a - Cornelius Roemer, 2023-10-12 23:14:36 +0200 : Designate BA.2.86.2 (ORF7a:E22D, South Africa/Botswana) with 25 seqs
bea249a - Cornelius Roemer, 2023-10-12 23:21:29 +0200 : Designate BA.2.86.3 (C222T, C1960T, T12775C, South Africa) with 25 seqs
6c3cbc3 - Cornelius Roemer, 2023-10-12 23:26:59 +0200 : Designate JQ.1 (BA.2.86.3.1, S:T95I, Denmark/France/South Africa) with 13 seqs
62ee71f - Cornelius Roemer, 2023-10-12 23:32:07 +0200 : Designate JN.2 (BA.2.86.1.2 with ORF1a:Y621C, Europe/North America) with 100 seqs
8424ad2 - Cornelius Roemer, 2023-10-12 23:34:17 +0200 : Designate JN.3 (BA.2.86.1.3, ORF1a:T2087I, Europe) with 60 seqs
b14b69a - Cornelius Roemer, 2023-10-12 23:50:19 +0200 : Designate GK.2.4 (S:K356T, USA-NY) with 15 seqs
f1b2dab - Cornelius Roemer, 2023-10-12 23:54:38 +0200 : Designate HK.12 (S:K356T, China/Singapore) with 12 seqs
4f9712c - Cornelius Roemer, 2023-10-12 23:58:51 +0200 : Designate EG.6.1.2 (S:V705I, Israel) with 80 seqs
c3904ca - Cornelius Roemer, 2023-10-13 00:09:30 +0200 : Designate HV.1.1 (S:K444T, on ORF1a:T4083M branch, USA) with 15 seqs
471889e - Cornelius Roemer, 2023-10-13 00:14:55 +0200 : Designate HV.1.2 (S:S514F, on ORF1a:T4083M branch, USA) and HV.1.3 (S:493L, USA)
ab3b625 - Cornelius Roemer, 2023-10-13 00:16:22 +0200 : Designate HV.1.4 (S:A1078S, USA) with 50 seqs
49cdcb4 - Cornelius Roemer, 2023-10-13 00:23:33 +0200 : Designate HK.13 (S:L455F (G22927C), China, 250 seqs) and HK.13.1 (C13378T, A24604G)
b123561 - Cornelius Roemer, 2023-10-13 00:25:33 +0200 : Designate HK.13.2 (S:F797L, S:D1153H) with 30 seqs
af79499 - Cornelius Roemer, 2023-10-13 00:29:02 +0200 : Designate HK.1.1 (S:456L (G22927T), China) with 40 seqs
2ee937c - Cornelius Roemer, 2023-10-13 00:31:29 +0200 : Designate HK.1.2 (S:455F (G22927C), S:T307I, China/New Zealand) with 50 seqs
c7550b1 - Cornelius Roemer, 2023-10-13 00:35:46 +0200 : Designate HK.14 (S:L455F (G22927C), on C11779T branch, China) with 80 seqs
04f540f - Cornelius Roemer, 2023-10-13 00:43:46 +0200 : Designate HK.15 (S:A262T, on C11779T branch) with 150 seqs
5283757 - Cornelius Roemer, 2023-10-13 00:47:41 +0200 : Designate EG.5.1.11 (S:K182Q, Indonesia) with 20 seqs
6ca5c26 - Cornelius Roemer, 2023-10-13 00:50:52 +0200 : JR.1 (EG.5.1.11.1, S:478R, ORF3a:Y91C, Indonesia) with 10 seqs
bd9a2f7 - Cornelius Roemer, 2023-10-13 00:52:38 +0200 : Designate JR.1.1 (S:L455F (G22927C)) with 10 seqs
dde47c8 - Cornelius Roemer, 2023-10-13 01:01:35 +0200 : Designate GA.2.1 (XBB.1.17.1.2.1, S:E554K) and GA.2.1.1 ( S:N450D, S:K478R)
561040b - Cornelius Roemer, 2023-10-13 01:05:11 +0200 : Designate GA.4.2 (S:K558N, S:G1124S, England/Italy) with 4 seqs
516ee4a - Cornelius Roemer, 2023-10-13 01:06:35 +0200 : Designate GA.4.3 (S:F186L, S:L585F, Greece/Romania) with 10 seqs
6106107 - Cornelius Roemer, 2023-10-13 01:08:51 +0200 : Designate GA.4.1.2 (S:T572I, England) with 10 seqs
521220b - Cornelius Roemer, 2023-10-13 01:12:33 +0200 : Designat HK.16 (N:P67S, S:A684V, S:V1264L) with 50 seqs
7362fc8 - Cornelius Roemer, 2023-10-13 01:15:01 +0200 : Designate HK.17 (S:S494P, China) with 50 seqs
1bf9c67 - Cornelius Roemer, 2023-10-13 01:18:07 +0200 : Designate HK.18 (S:L452R) with 30 seqs
d077888 - Cornelius Roemer, 2023-10-13 01:21:02 +0200 : Designate HK.19 (S:F157L) with 70 seqs
2fe3c52 - Cornelius Roemer, 2023-10-13 01:30:46 +0200 : Designate XBB.2.3.15 (ORF1a:I4308V)
8d36dfd - Cornelius Roemer, 2023-10-13 01:33:22 +0200 : Designate JS.1 (XBB.2.3.15.1, S:S256T) with 150 seqs
e5fbf04 - Cornelius Roemer, 2023-10-13 01:34:16 +0200 : Desingate JS.2 (S:T323I) with 100 seqs
7614167 - Cornelius Roemer, 2023-10-13 01:44:07 +0200 : Designate XCQ (Recombinant lineage of XBB.2.3 and XBB.1.5 (breakpoint between 23123-27431), Guatemala, from #2289) with 80 seqs
3acc442 - Cornelius Roemer, 2023-10-13 01:49:47 +0200 : Desingate XBB.2.3.16 (S:K478N, USA) with 15 seqs
45e216e - Cornelius Roemer, 2023-10-13 01:50:39 +0200 : Designate XBB.2.3.17 (S:N450D, USA) with 15 seqs
a4d823d - Cornelius Roemer, 2023-10-13 02:04:55 +0200 : Designate JD.2.1 (S:E554K, Brazil) with 20 seqs
a5fbef6 - Cornelius Roemer, 2023-10-13 02:24:49 +0200 : Designate GW.5.2 (N:T379I) and GW.5.3 (T20310C, C28519T)
7dcb5ae - Cornelius Roemer, 2023-10-13 02:28:03 +0200 : Designate GW.5.3.1 (S:A475V, S:G184A) with 10 seqs
2626654 - Cornelius Roemer, 2023-10-13 15:05:57 +0200 : Designate HW.1.2 (G15957A, Australia) and HW.1.3 (N:T391I, Australia)
0f50930 - Cornelius Roemer, 2023-10-13 15:32:39 +0200 : Designate XBC.1.6.5, XBC.1.6.6, JT.1 (XBC.1.6.6.1, S:V445A)
17d3581 - Cornelius Roemer, 2023-10-13 15:51:37 +0200 : Withdraw HK.1.1 as smaller than thought (only 6 sequences have 257V and G22927T)
cfe2ed8 - Cornelius Roemer, 2023-10-13 15:59:13 +0200 : Designate extra BA.2.86
032d300 - Memorable, 2023-10-13 22:23:41 +0800 : Update lineage_notes.txt forBA.86.2 and JN.2
bf14f63 - Cornelius Roemer, 2023-10-13 22:12:26 +0200 : Designate GL.2 (XAY.1.1.1.2, ORF1a:S723P, South Korea/Japan/HongKong) with 10 seqs
9088232 - Cornelius Roemer, 2023-10-13 22:15:47 +0200 : Designate GL.3 (XAY.1.1.1.3, ORF1a:P1640S, Germany) with 300 seqs
ba10206 - Cornelius Roemer, 2023-10-13 22:17:17 +0200 : Add extra XAY.1.1.1 designations
550f9b2 - Angie Hinrichs, 2023-10-13 13:34:39 -0700 : Merge pull request #2306 from ciscorucinski/fix/workflow/issue-milestone-collector
b06d726 - Angie Hinrichs, 2023-10-13 13:41:56 -0700 : Merge pull request #2324 from Memorablea/patch-1
1a5955d - Cornelius Roemer, 2023-10-13 23:05:28 +0200 : Designate XCR (recombinant lineage of GK.1.1 and FU.1 (breakpoint between 23674-24372), USA, from #2323)
3223321 - Cornelius Roemer, 2023-10-15 11:43:54 +0200 : Designate GK.5 (S:G181V, Brazil) and GK.5.1 (S:E180K)
6fe25ac - Cornelius Roemer, 2023-10-15 11:45:31 +0200 : Designate GK.6 (XBB.1.5.70.6, S:N556K, S:E583A) with 50 seqs
61604b2 - Cornelius Roemer, 2023-10-15 11:46:52 +0200 : Designate GK.7 (XBB.1.5.70.7, N:D3G) with 70 seqs
af7f5c4 - Cornelius Roemer, 2023-10-15 11:48:51 +0200 : Designate GK.8 (XBB.1.5.70.8, ORF:E55Q, Brazil) with 50 seqs
1c2b15f - Cornelius Roemer, 2023-10-15 11:50:52 +0200 : Designate GK.8.1 (XBB.1.5.70.8.1, S:N185I, S:A475V) with 15 seqs
d6326f6 - Cornelius Roemer, 2023-10-15 11:54:08 +0200 : Designate GK.9 (XBB.1.5.70.9, S:T307S, Brazil) with 10 seqs
51bb3dd - Cornelius Roemer, 2023-10-15 12:01:03 +0200 : Designate GK.10 (XBB.1.5.70.10, S:E554G, Brazil) with 15 seqs
92bde5e - Cornelius Roemer, 2023-10-15 12:02:13 +0200 : Designate GK.11 (XBB.1.5.70.11, S:T883I, Brazil) with 8 seqs
71796df - Cornelius Roemer, 2023-10-15 12:09:03 +0200 : Designate GK.1.5 (XBB.1.5.70.1.5, S:F186L, ORF1a:T1597I, Brazil) with 15 seqs
ab068f9 - Cornelius Roemer, 2023-10-15 12:11:07 +0200 : Designate GK.1.6 (XBB.1.5.70.1.6, ORF3a:V50I, Colombia) with 150 seqs
8e45078 - Cornelius Roemer, 2023-10-15 12:12:27 +0200 : Designate GK.1.6.1 (XBB.1.5.70.1.6.1, S:A475V, ORF1a:I114V, Colombia) with 15 seqs
ceff314 - Cornelius Roemer, 2023-10-15 12:23:42 +0200 : Add extra GK.1.2 designations (especially some without T16974C) and remove erroneously added #2093 from notes
2e02c0f - Cornelius Roemer, 2023-10-15 12:26:58 +0200 : Designate GK.1.2.1 (XBB.1.5.70.1.2.1, S:A475V, ORF1a:D147G, ORF1a:D2592Y, ORF1a:T4175I, ORF1b:N1426K, Brazil/Colombia) with 12 seqs
441b454 - Cornelius Roemer, 2023-10-15 12:29:11 +0200 : Designate GK.1.7 (S:F186L, T11695C, Europe)
fa557e4 - Cornelius Roemer, 2023-10-15 12:35:50 +0200 : Designate GK.1.8 (S:E554K, S:A475V, Brazil) with 20 seqs
22a348a - Cornelius Roemer, 2023-10-15 12:45:18 +0200 : Designate GK.12 (XBB.1.5.70.12, S:T76I, S:N450D, Brazil) with 5 seqs
686748e - Cornelius Roemer, 2023-10-15 12:52:19 +0200 : Designate GK.1.9 (C17010T, USA)
26ababf - Cornelius Roemer, 2023-10-15 13:02:12 +0200 : Designate XBB.1.16.25 (ORF1a:K510E, C16611T, A29221G) with 300 seqs
cc16c73 - Cornelius Roemer, 2023-10-15 13:04:07 +0200 : Designate XCS (Recombinant lineage of GK.1.9 and XBB.1.16.25 (breakpoint between 223674-25044), USA, from #2311) with 30 seqs
c58b4a4 - Cornelius Roemer, 2023-10-15 13:15:00 +0200 : Designate GK.1.1.1 (C28432T, donor of XCR) with 190 seqs
bd0e486 - Cornelius Roemer, 2023-10-15 13:22:27 +0200 : Designate FU.1.1 (XBB.1.16.1.1.1, S:K1266R) with 160 seqs
24d57cc - Cornelius Roemer, 2023-10-15 13:25:09 +0200 : Designate FU.1.1.1 (XBB.1.16.1.1.1.1, S:N74S, USA) with 70 seqs
b4e8ab1 - Cornelius Roemer, 2023-10-15 14:33:52 +0200 : Designate HG.3 (XBB.2.3.8.3, S:S255F, South Korea) with 35 seqs
fc51cdc - Cornelius Roemer, 2023-10-15 14:35:55 +0200 : Designate HG.1.1 (S:A1190S, South Korea) with 40 seqs
987a9be - Cornelius Roemer, 2023-10-15 14:40:24 +0200 : Designate XBB.2.3.18 (S:F456L (T22930A), S:N450D, S:1231A, India) with 8 seqs
70e727f - Cornelius Roemer, 2023-10-15 14:44:02 +0200 : Designate GS.6 (XBB.2.3.11.6, S:A845S, Wales) with 70 seqs
1293572 - Cornelius Roemer, 2023-10-15 14:46:23 +0200 : Designate GS.4.1.1 (XBB.2.3.11.4.1.1, S:P561S, France) with 50 seqs
4a0edbe - Cornelius Roemer, 2023-10-15 14:51:19 +0200 : Designate GS.7 (XBB.2.3.11.7, ORF1a:L204I, C14925T) with 150 seqs
0470496 - Cornelius Roemer, 2023-10-15 14:52:14 +0200 : Designate GS.7.1 (XBB.2.3.11.7.1, S:E180Q, Tunisia) with 18 seqs
32ea609 - Cornelius Roemer, 2023-10-15 14:56:04 +0200 : Designate GS.8 (XBB.2.3.11.8, ORF3a:I179V, Vietnam) with 150 seqs
7804cb5 - Cornelius Roemer, 2023-10-15 15:01:05 +0200 : Designate GJ.6 (XBB.2.3.3.6, S:F456L (T22930A), M:G6S, India) with 15 seqs
d6cfeab - Cornelius Roemer, 2023-10-15 15:02:43 +0200 : Designate GJ.7 (XBB.2.3.3.7, S:E183K, Australia/NewZealand) with 37 seqs
604740d - Cornelius Roemer, 2023-10-15 15:12:18 +0200 : Designate JU.1 (XBB.2.3.12.1, S:N148T, S:Q218R, S:N450D, Georgia/Russia) with 12 seqs
3ab2f9c - Cornelius Roemer, 2023-10-15 15:16:11 +0200 : Designate JV.1 (DV.7.1.2.1, S:G485R, France) with 50 seqs
777ef39 - Cornelius Roemer, 2023-10-15 15:17:13 +0200 : Designate JV.2 (DV.7.1.2.2, S:V772I, France/Spain) with 20 seqs
9b30a50 - Cornelius Roemer, 2023-10-15 15:49:49 +0200 : Designate JC.2 (XBB.1.41.1.2, S:D339R, ORF1a:V1056L, Greece) with 50 seqs
dd2cf17 - Cornelius Roemer, 2023-10-15 15:51:35 +0200 : Designate JC.3 (XBB.1.41.1.3, S:N703I, South Africa) with 12 seqs
16a3fd7 - Cornelius Roemer, 2023-10-15 15:52:41 +0200 : Designate JC.4 (XBB.1.41.1.4, S:N148S) with 20 seqs
d3d7c09 - Cornelius Roemer, 2023-10-15 15:54:42 +0200 : Designate JC.5 (XBB.1.41.1.5, ORF1a:P1220L, N:H300Y) with 300 seqs
b5acc84 - Cornelius Roemer, 2023-10-15 15:57:10 +0200 : Designate JC.6 (S:I1227V, South Africa) with 10 seqs
6624cc7 - Cornelius Roemer, 2023-10-15 15:58:42 +0200 : Designate XBB.1.41.3 (C17850T, C25276T, C29416G, Africa) with 170 seqs
6e5d22b - Cornelius Roemer, 2023-10-15 16:01:00 +0200 : Designate JW.1 (XBB.1.41.3.1, S:K478R, ORF1a:L397F, South Africa/DRC) with 15 seqs
786fce1 - Cornelius Roemer, 2023-10-15 16:17:47 +0200 : Designate FL.30.1 (XBB.1.9.1.30.1, S:A852S, Greece) with 40 seqs
3bfa8a4 - Cornelius Roemer, 2023-10-15 16:18:39 +0200 : Designate FL.30.1 (XBB.1.9.1.30.1, S:A852S, Greece) with 40 seqs
4ae0f4c - Cornelius Roemer, 2023-10-15 16:20:18 +0200 : Designate FL.13.2.1 (S:D178H, South Korea) with 80 seqs
7353561 - Cornelius Roemer, 2023-10-15 16:25:40 +0200 : Designate FL.13.4 (XBB.1.9.1.13.4, S:K182E, S:F456L (T22928C), Pakistan) with 20 seqs
d917828 - Cornelius Roemer, 2023-10-15 16:26:31 +0200 : Designate FL.13.4.1 (XBB.1.9.1.13.4.1, S:Q14H, S:A484T) with 12 seqs
73069df - Cornelius Roemer, 2023-10-15 16:29:23 +0200 : Designate FL.13.5 (XBB.1.9.1.13.5, S:F456L (T22928C), ORF1a:T1000I, ORF1a:L2527M, Chile/Argentina)
78a8f34 - Cornelius Roemer, 2023-10-15 17:17:20 +0200 : Designate JG.4 (C1684T, Europe) with 200 seqs
3ab5873 - Cornelius Roemer, 2023-10-15 17:24:30 +0200 : Designate DV.7.1.3 (S:A262S, on branch ORF1a:K3353R) with 30 seqs
73e23b2 - Cornelius Roemer, 2023-10-15 17:27:39 +0200 : Designate DV.7.1.4 (G28001T, on branch ORF1a:K3353R) with 400 seqs
c57b914 - Cornelius Roemer, 2023-10-15 17:34:53 +0200 : Designate DV.7.1.5 (N:T135I, Spain) with 500 seqs
85496f1 - Cornelius Roemer, 2023-10-15 17:41:15 +0200 : Designate XCT (Recombinant lineage of JG.4, DV.7.1, JG.4 (breakpoints at 18430-19885 and 25960-27506), Europe, from sars-cov-2-variants/lineage-proposals#811)
7926d25 - Cornelius Roemer, 2023-10-15 17:54:59 +0200 : Designate XBC.1.7.1 (S:N185S, Philiippines) and XBC.1.7.2 (S:T299I, Australia)
69fe1f6 - Cornelius Roemer, 2023-10-15 17:56:14 +0200 : Add extra XBC.1.7 designations
a2fa445 - Cornelius Roemer, 2023-10-15 19:22:41 +0200 : Designate FL.23.2 (S:S494P, ORF1a:P2256S, Philippines) and FL.23.2.1 (S:P521T, Philippines)
4806a9b - Cornelius Roemer, 2023-10-15 19:32:32 +0200 : Designate XCU (Recombinant lineage of XBC.1.7.1 and FL.23.2.1 (breakpoint 22329-22577), Philippines, from sars-cov-2-variants/lineage-proposals#935) with 3 seqs
9f285db - Cornelius Roemer, 2023-10-15 19:50:10 +0200 : Designate HH.2.1 (XBB.2.3.2.2.1, S:K478R, England/France) and HH.3 (XBB.2.3.2.3, S:D1260Y, Japan)
14ec7d1 - Cornelius Roemer, 2023-10-15 19:51:28 +0200 : Designate HH.4 (XBB.2.3.2.4, S:A845S, India)
382b56b - Cornelius Roemer, 2023-10-15 19:53:05 +0200 : Designate HH.5 (XBB.2.3.2.5, S:K147N, India) with 140 seqs
efcd0ee - Cornelius Roemer, 2023-10-15 19:55:08 +0200 : Designate HH.6 (S:K478R, ORF1a:D935E, India) with 10 seqs
e7a016a - Cornelius Roemer, 2023-10-15 19:57:46 +0200 : Designate HH.7 ( XBB.2.3.2.7, ORF1a:T1788M, India) with 400 seqs
8264110 - Cornelius Roemer, 2023-10-15 19:59:34 +0200 : Designate HH.8 (XBB.2.3.2.8, S:Q607R) and HH.8.1 (XBB.2.3.2.8.1, S:K478R)
c505575 - Cornelius Roemer, 2023-10-15 20:04:22 +0200 : Designate GE.1.4 (XBB.2.3.10.1.4, ORF1a:P3359S) and GE.1.5 (XBB.2.3.10.1.5, G6352A, C11653T, T16242A)
2a69d7e - Cornelius Roemer, 2023-10-15 20:11:43 +0200 : Designate GE.1.6 (XBB.2.3.10.1.6, S:L118I) with 50 seqs
083357e - Cornelius Roemer, 2023-10-15 20:37:07 +0200 : Designate XBB.2.3.19 (S:G184V, ORF1a:P1786L, India) with 500 seqs
e4f431b - Cornelius Roemer, 2023-10-15 20:41:56 +0200 : Designate JY.1 (XBB.2.3.19.1, S:E654K, S:K478T (rev), India) with 65 seqs
beefc0b - Cornelius Roemer, 2023-10-15 20:43:55 +0200 : Designate JY.1.1 (XBB.2.3.19.1, S:T1117K) with 40 seqs
325315c - Cornelius Roemer, 2023-10-15 21:01:10 +0200 : Designate JG.3.1 (EG.5.1.3.3.1, S:T307I) with 170 seqs
d75dabe - Cornelius Roemer, 2023-10-15 21:03:26 +0200 : Designate HK.2.1 (XBB.1.9.2.5.1.1.2.1, S:L455F, Singapore) with 50 seqs
3b5d3d1 - Cornelius Roemer, 2023-10-15 21:05:00 +0200 : Designate HK.3.4 (S:P809S)
c1e681c - Cornelius Roemer, 2023-10-15 21:06:19 +0200 : Designate HK.3.5 ( S:P174S, Singapore) with 80 seqs
68f0859 - Cornelius Roemer, 2023-10-15 21:09:44 +0200 : Designate HK.3.6 (S:G181R, China) with 50 seqs
e0fe839 - Cornelius Roemer, 2023-10-15 21:12:39 +0200 : Designate HK.3.7 (S:V171I, Singapore/China) with 30 seqs
e268dbf - Cornelius Roemer, 2023-10-15 22:22:19 +0200 : Designate HK.11.1 (S:L455F, 22927T) with 50 seqs, designate FL.35.1 (S:478R, South Africa)
a0386e2 - Cornelius Roemer, 2023-10-15 22:51:43 +0200 : Designate GA.7 (XBB.1.17.1.7, ORF1a:T1429I, Cote d'Ivoire) with 65 seqs
d00ef95 - Cornelius Roemer, 2023-10-15 22:53:06 +0200 : Designate GA.7.1 ( S:P521S, S:N148T, S:S494P, S:Q218R) with 20 seq
7303764 - Cornelius Roemer, 2023-10-15 22:54:03 +0200 : Designate GA.7.2 (S:H245Y) with 30 seqs
cf15db0 - Cornelius Roemer, 2023-10-15 22:57:34 +0200 : Designate GA.8 (C3619T, C27389T, Congo) with 70 seqs
4810cff - Cornelius Roemer, 2023-10-15 22:58:32 +0200 : Designate GA.8.1 (S:K182E, S:S494P, S:E554K, France/Belgium) with 7 seqs
04da949 - Cornelius Roemer, 2023-10-15 23:00:18 +0200 : Designate GA.9 (ORF3a:K67N,T7534C,C29719A) with 65 seqs
86be75f - Cornelius Roemer, 2023-10-15 23:03:10 +0200 : Designate GA.10 (ORF1a:V4520I) with 10 seqs
3965633 - Cornelius Roemer, 2023-10-15 23:25:29 +0200 : Designate XCV (Recombinant lineage of XBB.1.16.19, EG.5.1.3, XBB.1.16.19 (breakpoints 9694-11749 and 22996-27064), USA/Canada, from #2210)
76e2699 - Cornelius Roemer, 2023-10-15 23:52:32 +0200 : Designate XBB.2.3.20 (N:A267S, S:210del, Bangladesh, from sars-cov-2-variants/lineage-proposals#328)
f44449c - Cornelius Roemer, 2023-10-15 23:55:40 +0200 : Designate XCW (Recombinant lineage of XBB.2.3.20, XBB.1.16.15 (breakpoint 22996-27430), India/USA from #2260) with 80 seqs
2838fe9 - Federico Gueli, 2023-10-16 00:01:30 +0200 : Update lineage_notes.txt
856edb1 - Cornelius Roemer, 2023-10-16 00:24:48 +0200 : Designate XBB.1.5.107 (C24130T, Argentina/Uruguay/Bolivia), JZ.1 (XBB.1.5.107.1, S:F456L)
b14c491 - Cornelius Roemer, 2023-10-16 00:28:07 +0200 : Designate FD.5 (XBB.1.5.15.5, ORF10:A8V, Peru) and FD.5.1 (S:F456L (T22928C), S:N185D, Peru)
6a16571 - Cornelius Roemer, 2023-10-16 00:30:54 +0200 : Designate HE.2 (FE.1.1.1.2, S:H1058Y, USA) with 25 seqs
ae65d87 - Cornelius Roemer, 2023-10-16 00:34:29 +0200 : Designate FE.1.1.5 (S:E554K, Brazil) with 70 seqs
f8fd4e6 - Cornelius Roemer, 2023-10-16 00:40:25 +0200 : Designate KA.1 (XBB.1.5.103.1, S:E554K, Argentina/France/Spain) with 70 seqs
6234f2e - Cornelius Roemer, 2023-10-16 00:41:53 +0200 : Designate GN.1.2 ( XBB.1.5.73.1.2, S:Q321L) with 30 seqs
98aa641 - Cornelius Roemer, 2023-10-16 00:45:39 +0200 : Designate GN.1.3 (XBB.1.5.73.1.3, S:L455F (G22927T)) with 10 seqs
8777c36 - Cornelius Roemer, 2023-10-16 01:37:30 +0200 : Add JY.1.1 to lineage notes (forgot it)
0f46002 - Cornelius Roemer, 2023-10-16 02:07:03 +0200 : Designate XCY (Recombinant lineage of EG.5.1.3, GK.4 (or GK.3.1) (breakpoint 21719-22569), France, from sars-cov-2-variants/lineage-proposals#887) with 10 seqs
b36a0f3 - Cornelius Roemer, 2023-10-16 02:36:00 +0200 : Designate XCZ (Recombinant lineage of EG.5.1.1, GK.1.1 (breakpoint 18492-21718), France/Italy/England) with 17 seqs
22c1047 - Federico Gueli, 2023-10-16 10:52:23 +0200 : Update lineage_notes.txt
1c917f8 - Federico Gueli, 2023-10-16 10:57:15 +0200 : Update lineage_notes.txt
088ca7a - Federico Gueli, 2023-10-16 11:13:08 +0200 : Update lineage_notes.txt
beea59d - Cornelius Roemer, 2023-10-16 17:15:43 +0200 : fix: remove hCoV-19/ prefix from JY.1 designations in lineages.csv
99def8b - Angie Hinrichs, 2023-10-16 08:52:01 -0700 : Merge pull request #2328 from FedeGueli/patch-17
64c782e - Angie Hinrichs, 2023-10-16 08:53:04 -0700 : Merge pull request #2329 from FedeGueli/patch-18
1582bb9 - Angie Hinrichs, 2023-10-16 08:53:29 -0700 : Merge pull request #2330 from FedeGueli/patch-19
fb76386 - Angie Hinrichs, 2023-10-16 08:54:02 -0700 : Merge pull request #2331 from FedeGueli/patch-20
6935006 - Cornelius Roemer, 2023-10-16 17:53:08 +0200 : Designate FY.8 (XBB.1.22.1.8, S:T572I) with 200 seqs
0edc7ed - Cornelius Roemer, 2023-10-16 17:58:59 +0200 : Broaden FY.6 to not require T2935C
fa554d1 - Cornelius Roemer, 2023-10-16 18:06:01 +0200 : Designate FY.6.1 (S:S939F, Japan) and FY.6.2 (ORF1a:A3143V, ins_S:216:SLQGN, Japan)
066dbbb - Cornelius Roemer, 2023-10-16 18:08:39 +0200 : Designate FY.9 (XBB.1.22.1.9, S:Q675K, ORF1a:D220E, ORF1a:C667Y, Indonesia) with 50 seqs
1a048d5 - Cornelius Roemer, 2023-10-16 18:11:06 +0200 : Designate FY.1.4 (XBB.1.22.1.1.3, S:478R, S:D1084G, USA) and FY.1.4.1 (S:I569T, S:N185S, USA)
9534ad4 - Cornelius Roemer, 2023-10-16 18:13:15 +0200 : Designate FY.5.1 (XBB.1.22.1.5.1, S:T572I) with 25 seqs
7f3883f - Cornelius Roemer, 2023-10-16 18:22:28 +0200 : Designate FY.5.1.1 (S:M153I, S:F186S, S:S247N) with 5 seqs
4d6f729 - Angie Hinrichs, 2023-10-16 09:44:32 -0700 : Merge pull request #2283 from ciscorucinski/lineage_notes_RaphaelRaphael
277b9e0 - Cornelius Roemer, 2023-10-16 19:07:07 +0200 : Designate extra XCN
01e32ba - Cornelius Roemer, 2023-10-17 00:25:44 +0200 : Designate HN.2 (FL.1.5.1.2) and HN.2.1 (S:Q836R)
a5105d2 - Cornelius Roemer, 2023-10-17 00:29:27 +0200 : Designate HN.3 (S:S494P) with 90 seqs
ffa4130 - Cornelius Roemer, 2023-10-17 00:34:45 +0200 : Designate HN.3.1 (S:E554D) with 50 seqs
fd6c39c - Cornelius Roemer, 2023-10-17 00:40:35 +0200 : Designate HN.4 (ORF1a:T403I) with 400 seqs
b16ba74 - Cornelius Roemer, 2023-10-17 00:44:11 +0200 : Designate HN.5 (FL.1.5.1.5, S:E554K)
135aa0f - Federico Gueli, 2023-10-17 11:45:39 +0200 : Update lineage_notes.txt
d188492 - Federico Gueli, 2023-10-17 12:06:19 +0200 : Update lineage_notes.txt
7d3babf - Federico Gueli, 2023-10-17 12:17:51 +0200 : Update lineage_notes.txt
ca04b0b - Angie Hinrichs, 2023-10-17 06:33:55 -0700 : Merge pull request #2333 from FedeGueli/patch-21
720cf2f - Angie Hinrichs, 2023-10-17 06:35:17 -0700 : Merge pull request #2334 from FedeGueli/patch-22
f290593 - Angie Hinrichs, 2023-10-17 06:36:36 -0700 : Merge pull request #2335 from FedeGueli/patch-23
f8f6d23 - Cornelius Roemer, 2023-10-17 21:51:02 +0200 : Designate HN.6 (ORF1a:D1933A)
7eb5f36 - Cornelius Roemer, 2023-10-17 21:52:52 +0200 : Designate GA.4.1.3 (XBB.1.17.1.4.1.3, S:185insLAG, S:F186D, N:K370N, ORF1a:V1339I) with 15 seqs
c458133 - Cornelius Roemer, 2023-10-18 14:52:58 +0200 : Designate 4 extra XCY sequences
0d2c219 - Cornelius Roemer, 2023-10-18 17:26:24 +0200 : Remove low-quality XCY sequence from lineages.csv
749694f - Cornelius Roemer, 2023-10-18 17:35:53 +0200 : Remove pooled gingko bioworks samples from lineages.csv
36aee64 - Cornelius Roemer, 2023-10-18 17:38:51 +0200 : Remove two XCT designations that are possibly a different lineage
5b83cc1 - Cornelius Roemer, 2023-10-18 17:39:36 +0200 : Add extra XCT designations
e7ee3c5 - Cornelius Roemer, 2023-10-18 18:49:33 +0200 : Designate XDA (Recombinant lineage of XBB.1.16, HN.5 (breakpoint 22102-22927), from sars-cov-2-variants/lineage-proposals#862)
ee56f95 - Cornelius Roemer, 2023-10-18 19:01:15 +0200 : Remove erroneous XCT designations
f1e5c72 - Cornelius Roemer, 2023-10-18 23:28:07 +0200 : Designate XDB (Recombinant lineage of XBB.1.16.19, non-XBB.1.16/EG.5/XBB.2.3 XBB (breakpoint ~28000, depending on donor), Indonesia)
1bf4123 - Cornelius Roemer, 2023-10-18 23:45:02 +0200 : Designate XDC (Recombinant lineage of HK.3, XBB.1.16 (breakpoint 22996-27506), China/Singapore, from sars-cov-2-variants/lineage-proposals#902)
18ebd9d - aviczhl2, 2023-10-20 08:39:40 +0800 : add 2 refs from main page and 78 from lineage-proposal
8cee4af - Angie Hinrichs, 2023-10-20 16:56:45 -0700 : Merge pull request #2338 from aviczhl2/master
71cf97b - Cornelius Roemer, 2023-11-02 05:11:52 +0100 : Designate HK.20 (S:L455F, on ORF1a:P2144S branch, China) and HK.20.1 (S:G482R)
8c291c7 - Cornelius Roemer, 2023-11-12 00:28:23 +0100 : Designate JN.4 (BA.2.86.1 with S:A475V but lacking C12815T), with 35 seqs
ff6f0f0 - Cornelius Roemer, 2023-11-12 12:18:07 +0100 : Add extra HK.3.2 designations
31270ad - Cornelius Roemer, 2023-11-12 12:32:39 +0100 : Designate JD.1.2.1 (S:E554Q, from sars-cov-2-variants/lineage-proposals#870) with 50 seqs
186ea76 - Cornelius Roemer, 2023-11-12 12:42:20 +0100 : Designate HK.21 (S:T470N, S:796H, from #2367) with 30 seqs
321e3e2 - Cornelius Roemer, 2023-11-12 12:46:48 +0100 : Designate XCT.1 (S:S704L, from #2358) with 30 seqs
2d3115a - Cornelius Roemer, 2023-11-12 13:19:42 +0100 : Designate HK.22 (S:L455F, S:L452Q, Australia/China, from #2357) with 14 seqs
b7fda81 - Cornelius Roemer, 2023-11-12 13:29:42 +0100 : Designate XBB.1.16.26 (S:L455F, S:F456L, China) with 50 seqs
e16f043 - Cornelius Roemer, 2023-11-14 14:37:34 +0100 : Designate JN.5 (BA.2.86.1.5, N:T135I) with 100 seqs
db63874 - Cornelius Roemer, 2023-11-14 14:40:34 +0100 : Designate JN.6 (BA.2.86.1.6, S:V193L) with 40 seqs
3dea796 - Cornelius Roemer, 2023-11-17 01:06:59 +0100 : Designate JG.3.2 (S:N450D, Canada, from #2376) with 50 seqs
6ebf3a4 - Cornelius Roemer, 2023-11-17 01:10:48 +0100 : Designate JG.3.3 (S:A83S, Belgium) with 40 seqs
9f55753 - Cornelius Roemer, 2023-11-17 01:15:08 +0100 : Designate GK.1.10 (Orf1a:I573V, Orf1a:T4129I, Orf9b:T95M, Brazil, from #2375) with 200 seqs
2020508 - Cornelius Roemer, 2023-11-17 01:20:40 +0100 : Designate JN.7 (BA.2.86.1 with S:G594S, Denmark) with 22 seqs
f53c4e4 - Cornelius Roemer, 2023-11-17 01:27:00 +0100 : Designate JN.8 (S:T299I, Sweden/Denmark) with 26 seqs
7697276 - Cornelius Roemer, 2023-11-17 01:28:34 +0100 : Designate JN.9 (S:M1229I, Netherlands) with 30 seqs
8844830 - Cornelius Roemer, 2023-11-17 01:38:30 +0100 : Designate JN.3.1 (S:L922F, ORf7a:T28I, Spain) and HR.1.1 (XBB.1.5.77.1.1, S:K304N, Costa Rica, from #2372)
5561004 - Cornelius Roemer, 2023-11-17 02:01:09 +0100 : Tag #2363 for JG.3.3
5a74af8 - Cornelius Roemer, 2023-11-17 04:22:22 +0100 : Designate XDD (Recombinant of EG.5.1.1, JN.1, EG.5.1.1 (breakpoints at 6541-7842 and 25416-26270), USA/France/Spain)
a99787b - Cornelius Roemer, 2023-11-17 17:06:15 +0100 : Designate extra XDD: Spain/PV-HUD-96107835/2023
b09f648 - Cornelius Roemer, 2023-11-21 07:33:21 +0100 : Designate JN.2.1 (S:S31F, Sweden/Australia) with 28 seqs
0a75629 - Cornelius Roemer, 2023-11-21 07:40:39 +0100 : Designate JN.10 (S:A475V, on T3565C branch with JN.1, Spain/France) with 25 seqs
1aef931 - Cornelius Roemer, 2023-11-21 07:52:52 +0100 : Designate BA.2.86.4 (S:A222V, ORF1a:V3892A) with 18 seqs
5186c33 - Cornelius Roemer, 2023-11-21 08:01:19 +0100 : Designate JN.5.1 (S:A475S, T2950A, A28052G, C29541T, England/Belgium) with 14 seqs
d15a745 - Cornelius Roemer, 2023-11-21 08:09:59 +0100 : Designate JD.1.1.4 (S:E554G, Australia, from #2380) wioth 50 seqs
b9034d2 - Cornelius Roemer, 2023-11-21 08:17:22 +0100 : Designate HK.3.8 (S:E554K, China/Sweden, from #2377) with 30 seqs
6dc5507 - Cornelius Roemer, 2023-11-21 08:20:04 +0100 : Designate HK.3.2.1 (S:Q677H) with 80 seqs
9585f56 - Cornelius Roemer, 2023-11-21 08:31:11 +0100 : Designate FL.15.4 (S:Q14H, on G6819A branch, from #2359) with 100 seqs
037fd76 - Cornelius Roemer, 2023-11-21 08:33:21 +0100 : Designate HK.8.1 (S:D1153Y, China, from #2356) with 100 seqs
1f6b1c1 - Cornelius Roemer, 2023-11-21 08:49:55 +0100 : Designate XDE (Recombinant lineage of GW.5.1 and FL.13.4 (breakpoint at 24034-24046), Pakistan, from #2352) with 15 seqs
91b149c - Cornelius Roemer, 2023-11-21 08:57:01 +0100 : Designate KB.1 (EG.5.1.8.1, S:E654V, China, from #2347) with 100 seqs
f38283e - Cornelius Roemer, 2023-11-21 09:25:58 +0100 : Designate XBB.1.16.27 (S:F456L, S:E554K, ORF1a:A3889T, France, from #2345) with 100 seqs
f9269e8 - Cornelius Roemer, 2023-11-24 05:15:22 +0100 : Designate XDF (Recombinant lineage of XBB* (with C335T) and EG.5.1.3 (breakpoint around 2335-9692), from sars-cov-2-variants/lineage-proposals#1088) with 50 seqs
f2ba14a - Cornelius Roemer, 2023-11-24 05:37:11 +0100 : Designate EG.5.2.4 (S:K679R, on ORF3a:I118V branch) with 25 seqs
9e5da1f - Cornelius Roemer, 2023-11-24 05:44:08 +0100 : Designate FL.37 (Alias of XBB.1.9.1.37, C547T, C29614T) with 180 seqs
d7b0265 - Cornelius Roemer, 2023-11-24 05:46:17 +0100 : Designate XDG (Recombinant lineage of FL.37 and EG.5.2.4 (breakpoint at 6729-9693), from #2348) with 25 seqs
a699198 - Cornelius Roemer, 2023-11-24 06:32:41 +0100 : Designate HK.3.2.2 (S:N185D, Australia) with 30 seqs
99ae758 - Cornelius Roemer, 2023-11-24 06:36:32 +0100 : Designate HK.3.9 (S:T732I, Australia) with 50 seqs
12691b3 - Cornelius Roemer, 2023-11-24 06:43:34 +0100 : Designate HK.23 (ORF8:A65V) with 310 seqs
b83d9aa - Cornelius Roemer, 2023-11-24 06:44:59 +0100 : Designate HK.23.1 (S:L455F, ORF1a:T2906N) with 246 seqs
b47c3ca - Cornelius Roemer, 2023-11-24 06:46:12 +0100 : Designate HK.23.1.1 (S:A348S, China/Canada) with 70 seqs
2110183 - Cornelius Roemer, 2023-11-24 06:54:25 +0100 : Designate HK.24 (S:E654K) with 50 seqs
7759638 - Cornelius Roemer, 2023-11-24 06:55:31 +0100 : Designate HK.24.1 (S:L455F, Australia) with 43 seqs
514be1e - Cornelius Roemer, 2023-11-24 06:58:24 +0100 : Designate HK.3.10 (S:A1078S) with 100 seqs
738adab - Cornelius Roemer, 2023-11-24 07:01:30 +0100 : Designate HK.3.11 (S:A475V, Finland/Denmark/Sweden) with 25 seqs
0c6878b - Cornelius Roemer, 2023-11-27 04:48:55 +0100 : Designate HK.25 (S:K356T, S:H681R, N:P365L, and 10 more nucs, Germany/Austria/France/US, from #2327 and sars-cov-2-variants/lineage-proposals#986)
7db6627 - Cornelius Roemer, 2023-11-28 11:31:04 +0100 : Designate KC.1 (FL.1.5.2.1, S:S490P, ORF1a:T4129I, ORF1a:S723F, Europe) and KC.1.1 (S:V1228L, England)
ce3f29b - Cornelius Roemer, 2023-11-28 13:26:22 +0100 : Withdraw HK.3.11 as study of EG.5.1.1 shows that "HK.3.11" is actually part of EG.5.1.1 + 14988C sublineage not HK.3
778efcf - Cornelius Roemer, 2023-11-28 13:37:59 +0100 : Designate HK.26 (S:L455F, ORF3a:L52I, on 14988C branch, Finland) with 600 seqs
e4da6b3 - Cornelius Roemer, 2023-11-28 13:39:05 +0100 : Designate HK.26.1 (S:A475V, Finland, formerly HK.3.11) with 45 seqs
9c45579 - Cornelius Roemer, 2023-11-28 14:02:16 +0100 : Designate HK.27 (ORF1a:T1589I, China), HK.27.1 (S:L455F, China), HK.27.1.1 (S:Q14H, China)
7cb206e - Cornelius Roemer, 2023-11-28 14:07:03 +0100 : Designate HK.28 (C19170T, China)
d0cdcaa - Cornelius Roemer, 2023-11-28 14:09:29 +0100 : Designate HK.29 (ORF1a:G2509D, North America) with 700 seqs
7b8fb1e - Cornelius Roemer, 2023-11-28 14:11:27 +0100 : Designate HK.30 (T26609C, China) with 900 seqs
bcc23cc - Cornelius Roemer, 2023-11-28 14:21:58 +0100 : Designate HK.31 (ORF1a:G604S)
e849bed - Cornelius Roemer, 2023-11-28 14:24:05 +0100 : Designate HK.32 (C27059T)
6e3305f - Cornelius Roemer, 2023-11-28 14:25:07 +0100 : Designate HK.32.1 (S:L455F)
43c2d40 - Cornelius Roemer, 2023-11-28 14:34:22 +0100 : Designate EG.5.1.12 (T26972C, C28909T)
1d02439 - Cornelius Roemer, 2023-11-28 14:36:21 +0100 : Designate EG.5.1.13 (C12439T)
9266cca - Cornelius Roemer, 2023-11-28 14:39:43 +0100 : Designate EG.5.1.14 (C16017T, C19524T) and EG.5.1.15 (ORF1a:T753I)
1d8fb47 - Cornelius Roemer, 2023-11-28 14:42:25 +0100 : Designate EG.5.1.16 (ORF1b:A2431V)
0647dae - Cornelius Roemer, 2023-11-28 15:13:29 +0100 : Undo HK.32(.1) designation as it seems to be artefact, only 42 seqs in GISAID, not 300
5a8103c - Cornelius Roemer, 2023-11-28 15:20:43 +0100 : Designate EG.5.1.17 (S:L455F (G22927C), China)
034c2c4 - Cornelius Roemer, 2023-11-28 15:22:11 +0100 : Designate EG.5.1.18 (ORF1a:G3002S, ORF3a:S220I)
0807c23 - Cornelius Roemer, 2023-11-28 15:25:32 +0100 : Designate EG.5.1.19 (S:L455F, ORF1b:K1383R, ORF3a:M260K) with 140 seqs
682de0e - Cornelius Roemer, 2023-11-28 15:33:30 +0100 : Designate KB.2 (S:R214H), KB.3 (S:A83T), KB.4 (S:T95I)
e5d4273 - Cornelius Roemer, 2023-11-28 15:44:58 +0100 : Designate BA.2.86.5 (S:I197V, C5575T, T6085C, T23278C)
ad90952 - Cornelius Roemer, 2023-11-28 16:24:01 +0100 : Designate JN.1.1 (ORF1a:F499L, C11747T, France)
0bc95d2 - Cornelius Roemer, 2023-11-28 17:38:24 +0100 : Designate DV.7.1.6 (S:Q183K, N:A217S)
334de42 - Cornelius Roemer, 2023-11-28 17:39:21 +0100 : Designate DV.7.1.7 (S:V90I)
5490ffc - Cornelius Roemer, 2023-11-28 17:50:39 +0100 : Designate JB.1.1 (XBB.1.5.53.1.1, S:K478R, South Africa)
2c95200 - Cornelius Roemer, 2023-11-29 16:28:09 +0100 : Designate JR.1.1.1 (S:K356Q, Thailand) with 18 seqs
66cc3db - Cornelius Roemer, 2023-11-30 11:47:04 +0100 : Deisgnate GY.1.1 (S:F456L, S:L455F, China) with 50 seqs
8e1a2da - Cornelius Roemer, 2023-11-30 11:50:09 +0100 : Designate GY.1.1.1 (S:A475V, Thailand)
37a695a - Cornelius Roemer, 2023-11-30 12:32:21 +0100 : Designate FY.8.1 (S:478R, T4579A) with 100 seqs
57d244d - Cornelius Roemer, 2023-11-30 16:48:21 +0100 : Designate EG.10.1.1.1 (XBB.1.9.2.10.1.1, ORF1a:V2703L, ORF1a:V3683I, ORF1b:P1570S)
d0b5628 - Cornelius Roemer, 2023-12-01 11:09:28 +0100 : Designate BN.1.2.8 (S:N703K, Russia)
6e1a0a6 - Cornelius Roemer, 2023-12-01 11:11:21 +0100 : Designate XDH (Recombinant lineage of BN.1.2.8 and XBB.1.9.1 (or XBB.1.22) (breakpoint between 22630-22663), Lithuania/Belarus)
f3e9fb3 - Cornelius Roemer, 2023-12-01 11:19:56 +0100 : Designate XBC.1.3.1 (ORF1a:Q455K, ORF1a:T4174I, ORF1a:V2061A, ORF1b:S759N, Australia/New Zealand) with 1000 seqs
b81fd89 - Cornelius Roemer, 2023-12-01 11:22:36 +0100 : Designate KD.1 (XBC.1.3.1.1, S:R346S, Australia) with 40 seqs
3300cd3 - Cornelius Roemer, 2023-12-01 11:28:15 +0100 : Designate KD.2 (ORF1a:M3661L, ORF1a:M3934I, Australia/New Zealand), KD.3 (XBC.1.3.1.3, C10519T, C19524T, New Zealand), KD.4 ( XBC.1.3.1.4, ORF1a:K394R, ORF1a:L730F, ORF1a:T965I, Australia/Japan)
f5ad0e7 - Cornelius Roemer, 2023-12-01 11:32:03 +0100 : Designate KD.5 (XBC.1.3.1.5, S:L244F, Australia)
b419533 - Cornelius Roemer, 2023-12-01 13:49:37 +0100 : Designate JP.1.1 (CH.1.1.31.1, S:G1219V, ORF1a:T1542I, South Africa) with 15 seqs
10d1bb4 - Cornelius Roemer, 2023-12-02 13:38:55 +0100 : Designate JN.1.1.1 (S:T572I after C9142T, France/Sweden/Poland) with 20 seqs
3a8e590 - Cornelius Roemer, 2023-12-02 13:46:51 +0100 : Designate JN.1.2 (S:M1229I, USA/Canada) with 40 seqs
4813e2f - Cornelius Roemer, 2023-12-02 14:21:07 +0100 : Designate HV.1.5 (S:L1265F, USA/Canada) with 150 seqs
ffdf027 - Cornelius Roemer, 2023-12-02 14:23:18 +0100 : Designate HV.1.6 (ORF1a:T1794I, ORF1a:P2018S, Canada/USA) with 400 seqs
6c64902 - Cornelius Roemer, 2023-12-02 14:24:32 +0100 : Designate HV.1.6.1 ( S:S704L, Canada) with 100 seqs
57891f2 - Cornelius Roemer, 2023-12-02 14:25:55 +0100 : Designate HV.1.7 (S:S221L, Canada) with 70 seqs
23f0643 - Cornelius Roemer, 2023-12-02 14:37:26 +0100 : Designate JD.1.1.5 ( S:Q677R, USA/Canada) with 40 seqs
52ecee7 - Cornelius Roemer, 2023-12-02 14:39:20 +0100 : Designate JD.1.1.6 (S:M153V, Brazil) with 15 seqs
a60930a - Cornelius Roemer, 2023-12-02 15:07:37 +0100 : Designate FY.5.2 (S:L176F) with 70 seqs
f32c7d6 - Cornelius Roemer, 2023-12-02 15:10:27 +0100 : Designate FY.5.3 (S:A222V, Singapore/Japan) with 50 seqs
a7277a5 - Cornelius Roemer, 2023-12-02 15:38:28 +0100 : Designate KE.1 (GW.5.1.1.1, S:F186S, England/Wales) with 50 seqs
50e7dd7 - Cornelius Roemer, 2023-12-02 15:40:07 +0100 : Designate KE.2 (S:S704L, UK) with 15 seqs
8ee41ec - Cornelius Roemer, 2023-12-02 15:41:29 +0100 : Designate KE.3 (ORF1a:L3641S, ORF1a:T5131I, ORF7a:M1K, UK) with 300 seqs
59ba6cf - Cornelius Roemer, 2023-12-02 15:47:27 +0100 : Designate GY.9 (S:F186S, Europe) with 50 seqs
1231b4b - Cornelius Roemer, 2023-12-02 15:51:13 +0100 : Designate HK.3.11 (XBB.1.9.2.5.1.1.3.11, S:F186S, China)
b1f5bb0 - Cornelius Roemer, 2023-12-02 15:58:00 +0100 : Designate HK.3.12 ( S:A688T, USA) and HK.3.13 ( S:Q14R, China)
fde1fd9 - Cornelius Roemer, 2023-12-02 16:00:32 +0100 : Designate HK.32 (S:Q14R, ORF1a:S2193F, China)
7ad122e - Cornelius Roemer, 2023-12-02 16:05:07 +0100 : Designate HK.33 (S:L455F on C2644T branch, North America)
893f654 - Cornelius Roemer, 2023-12-02 16:07:20 +0100 : Designate HK.34 (S:F186S, ORF1a:V3660M, on C2644T branch, Singapore)
372aae1 - Cornelius Roemer, 2023-12-02 19:44:17 +0100 : Desigante FY.5.4 (S:T572I, ORF1a:D3009N, ORF1a:Y4077C on A6019G branch)
622245d - Cornelius Roemer, 2023-12-02 19:45:37 +0100 : Designate FY.5.5 (ORF1a:M2796I)
c91bcf1 - Cornelius Roemer, 2023-12-02 19:46:46 +0100 : Designate FY.5.5.1 (S:T572I)
45544bc - Cornelius Roemer, 2023-12-02 19:53:30 +0100 : Designate FY.8.1.1 (S:P521Q, ORF1b:V1149L)
2f2a87f - Cornelius Roemer, 2023-12-02 19:56:54 +0100 : Designate HK.34.1 (S:K356T, Singapore)
29b9e3d - Cornelius Roemer, 2023-12-02 20:03:04 +0100 : Designate KF.1 (FL.15.1.1.1, S:P251H, Australia/Canada)
ebc4ac1 - Cornelius Roemer, 2023-12-02 20:04:07 +0100 : Designate KF.2 ( S:E183D, England/Australia/New Zealand)
9699a3c - Memorable, 2023-12-03 13:22:08 +0800 : Update lineage_notes.txt
38394f3 - Cornelius Roemer, 2023-12-03 12:35:06 +0100 : Designate GA.10.1 ( S:L455F, S:F456L, S:K478R)
7a8e13a - aviczhl2, 2023-12-11 10:49:22 +0800 : add_1_ref_from_main_page_and_54_from_lineage_proposal
40e637b - Angie Hinrichs, 2023-12-11 08:58:35 -0800 : Merge pull request #2409 from aviczhl2/master
b777af9 - Angie Hinrichs, 2023-12-15 15:41:09 -0800 : Merge pull request #2397 from Memorablea/patch-1
61ef3fc - Cornelius Roemer, 2023-12-17 08:48:51 +0100 : Designate JD.1.1.7 (ORF1b:R2257S) with 400 seqs
4433b81 - Cornelius Roemer, 2023-12-17 09:09:35 +0100 : Designate JD.1.1.8 (ORF1a:N1094K, without C19185T, Brazil) with 200 seqs
04a5849 - Cornelius Roemer, 2023-12-17 09:13:53 +0100 : Designate JD.1.2.2 (XBB.1.5.102.1.2.2, S:A1078T, Brazil) with 40 seqs
c4b325f - Cornelius Roemer, 2023-12-17 09:38:36 +0100 : Designate FY.1.2.1 (S:W64L)
81d752f - Cornelius Roemer, 2023-12-17 09:40:32 +0100 : Designate FY.1.2.2 (S:V1129I) with 200 seqs
1acd0df - Cornelius Roemer, 2023-12-17 09:42:22 +0100 : Designate FY.1.2.3 (S:D215H)
2efc9a1 - Cornelius Roemer, 2023-12-17 09:57:55 +0100 : Designate XBB.1.16.28 (S:V1230A, S:Q613H, S:Q675K, Russia) with 300 seqs
fdc5ffd - Cornelius Roemer, 2023-12-17 10:06:06 +0100 : Designate JF.3 (S:L455F, S:Q14H, S:S810L, USA/Australia)
42e991c - Cornelius Roemer, 2023-12-17 10:22:30 +0100 : Designate XBB.1.16.30 ( S:E554Q, on C7765T branch, USA/Germany)
1bf8560 - Cornelius Roemer, 2023-12-17 10:26:35 +0100 : Designate XBB.1.16.31 (T9004C, on C7765T branch)
1883968 - Cornelius Roemer, 2023-12-17 10:32:56 +0100 : Designate XDJ (Recombinant lineage of XBB.1.16.6 and HK.3.1 (breakpoint between 14857 and 16877), France, from sars-cov-2-variants/lineage-proposals#997) Resolves sars-cov-2-variants/lineage-proposals#997
40f0683 - Cornelius Roemer, 2023-12-17 10:46:54 +0100 : Designate XBB.1.5.108 (S:F456L, S:K304N)
ce3f061 - Cornelius Roemer, 2023-12-17 10:50:31 +0100 : Designate XCF.3 (S:R78M) with 45 seqs
67d6881 - Cornelius Roemer, 2023-12-17 10:53:37 +0100 : Designate XBB.1.5.109 (S:F456L, ORF1a:T654A)
97c319f - Cornelius Roemer, 2023-12-17 10:56:09 +0100 : Designate XBB.1.5.110 (ORF1aT4129I, Mexico)
99ee0c5 - Cornelius Roemer, 2023-12-17 11:06:27 +0100 : Designate XDA.1 (S:L176F)
3106b90 - Cornelius Roemer, 2023-12-17 11:18:41 +0100 : Designate XBB.2.3.21 (S:T883I, ORF1a:D3042N, 670T reversion, Japan)
4e3d1e5 - Cornelius Roemer, 2023-12-17 11:23:02 +0100 : Designate XBB.2.3.22 ( S:S937T, ORF8:K94T, Romania/Bulgaria)
2efdd29 - Cornelius Roemer, 2023-12-17 11:37:57 +0100 : Rename JD.2.2 to the correct JD.1.2.2 in lineages.csv
6e78c60 - Cornelius Roemer, 2023-12-17 19:34:41 +0100 : Designate XDK (Recombinant lineage of XBB.1.16.11 (likely) and JN.1.1.1 (breakpoint between 5315 and 6182), France, from #2415
c1741f5 - Cornelius Roemer, 2023-12-17 19:50:40 +0100 : Designate DV.7.1.8 (S:T961M, Spain)
c77220a - Cornelius Roemer, 2023-12-17 19:53:38 +0100 : Designate KG.1 (DV.7.1.5.1, S:M153I)
6cc02d3 - Cornelius Roemer, 2023-12-17 19:55:57 +0100 : Designate KG.2 (S:H49Y, S:A264D, S:G485R, Spain/Canada)
80ce1cc - Cornelius Roemer, 2023-12-17 19:57:16 +0100 : Designate DV.7.1.9 (S:R1185H, Australia)
bde0910 - Cornelius Roemer, 2023-12-17 20:09:49 +0100 : Designate GE.1.2.1 (XBB.2.3.10.1.2.1, S:478T, S:A376S)
f84dfde - Cornelius Roemer, 2023-12-17 20:11:43 +0100 : Designate JG.3.4 (XBB.1.9.2.5.1.3.3.4, S:478R, USA)
7f94a43 - Cornelius Roemer, 2023-12-17 20:13:50 +0100 : Designate FL.38 (S:K478R, S:Q613H, C25482T, Russia)
80be7b8 - Cornelius Roemer, 2023-12-17 20:16:47 +0100 : Designate HN.4.1 ( S:A1020S)
c5c8ede - Cornelius Roemer, 2023-12-17 20:17:47 +0100 : Designate HN.4.1.1 (S:I68T, S:L452R, S:E554K, New Zealand/Canada)
9666613 - Cornelius Roemer, 2023-12-17 20:19:01 +0100 : Designate HN.4.2 (S:Q14H, Georgia/Russia)
4b2f568 - Cornelius Roemer, 2023-12-17 20:21:02 +0100 : Designate FL.39 (ORF1a:E663K, Russia)
9a30b22 - Cornelius Roemer, 2023-12-17 20:21:54 +0100 : Designate FL.39.1 (S:K478R, S:P521S, Russia)
66d1db1 - Cornelius Roemer, 2023-12-17 20:23:52 +0100 : Designate FL.40 ( ORF1a:I3758V, Russia)
85628e7 - Cornelius Roemer, 2023-12-17 20:28:24 +0100 : Designate FL.24.1 (S:478R, T9139C, C24919T, Russia)
b89aa1c - Cornelius Roemer, 2023-12-17 20:31:14 +0100 : Designate FL.1.8 (S:K478R, S:P521T, M:I8V, Russia)
4296c42 - Federico Gueli, 2023-12-18 10:50:59 +0100 : Update lineage_notes.txt
d83cc43 - Angie Hinrichs, 2023-12-18 17:18:32 -0800 : Merge pull request #2417 from FedeGueli/patch-24
d93e7fa - Cornelius Roemer, 2023-12-20 11:32:00 +0100 : Designate JE.1.1.1 (S:V1122A, from #2390)
dcd0f40 - Cornelius Roemer, 2023-12-20 11:37:43 +0100 : Designate KH.1 (JE.1.1.1.1, S:E554K, on N:L13F, ORF1a:R135S (reversion) branch, from #2390)
6330f6e - Cornelius Roemer, 2023-12-20 16:28:54 +0100 : Designate JF.1.1 (XBB.1.16.6.1, ORF1a:S2030L) and JF.1.1.1 (S:A475V, ORF2a:P2005S)
c0e493d - Cornelius Roemer, 2023-12-20 16:31:11 +0100 : Designate JF.1.1.2 (XBB.1.16.6.1.1.2, S:V1264L)
62729dd - Cornelius Roemer, 2023-12-20 16:33:20 +0100 : Designate JF.4 (ORF1a:S212L, ORF8:A15V)
8ccac36 - Cornelius Roemer, 2023-12-20 17:41:14 +0100 : Designate JN.1.3 (ORF8:Q18*, Netherlands)
cd0b1e1 - Cornelius Roemer, 2023-12-21 18:17:01 +0100 : Designate GK.1.8.1 (S:K187I, S:A222P, Brazil/Paraguay)
9ff2ee0 - Cornelius Roemer, 2023-12-21 18:22:09 +0100 : Desigante GK.1.11 (S:A475V, ORF1a:P309L, Brazil)
9412002 - Cornelius Roemer, 2023-12-21 18:23:26 +0100 : Designate GK.1.11.1 (S:I68V, Brazil)
5527de8 - Cornelius Roemer, 2023-12-21 18:30:24 +0100 : Add extra JW.1 designations
932c46a - Cornelius Roemer, 2023-12-21 18:31:08 +0100 : Designate JW.1.1 (XBB.1.41.3.1.1, S:Q14K, South Africa)
5b80f92 - Cornelius Roemer, 2023-12-21 18:36:18 +0100 : Designate JC.5.1 ( S:Q173K, USA)
72a1e52 - Cornelius Roemer, 2023-12-21 18:43:06 +0100 : Designate GN.1.4 (S:G181V, Peru)
c3c3ced - Cornelius Roemer, 2023-12-21 18:55:15 +0100 : Designate XBB.1.16.32 (S:S490P, South Africa/USA)
67e00ec - Cornelius Roemer, 2023-12-21 18:57:36 +0100 : Designate KJ.1 (XBB.1.16.32.1, S:T573I, ORF1a:P1659L, South Africa)
5d46166 - Cornelius Roemer, 2023-12-21 18:59:55 +0100 : Designate FL.2.7 (ORF1a:A2618T)
2837a93 - Cornelius Roemer, 2023-12-21 19:00:57 +0100 : Designate FL.2.7.1 (S:K478R on ORF1a:V3718F branch, South Africa)
d1290fa - Federico Gueli, 2023-12-26 09:22:48 +0100 : Update lineage_notes.txt
e1ebc80 - Angie Hinrichs, 2023-12-28 10:58:46 -0800 : Merge pull request #2427 from FedeGueli/patch-26
53b94b5 - Angie Hinrichs, 2024-01-08 10:01:36 -0800 : Withdraw lineage KD.5 -- an indel artefact caused the false appearance of S:L244F as explained in #2405. (#2443)
20ddbad - Cornelius Roemer, 2024-01-08 19:28:58 +0100 : Designate JN.1.4 (ORF1a:T170IORF1a:T170I, Denmark/Singapore, from #2381)
e424d0f - Cornelius Roemer, 2024-01-08 19:52:59 +0100 : Designate XDL (Recombinant lineage of EG.5.1.1 and non-EG.5 (breakpoint between 25573-29624) with S:L455F and S:I1114T, China, from #2351) with 150 seqs
6077c40 - Federico Gueli, 2024-01-08 21:43:50 +0100 : Update lineage_notes.txt
b65a86e - Angie Hinrichs, 2024-01-08 13:29:28 -0800 : Merge pull request #2444 from FedeGueli/patch-27
136279f - Cornelius Roemer, 2024-01-09 12:23:29 +0100 : Designate HV.1.8 (S:T208M, USA) from #2432
f6e4c4f - Cornelius Roemer, 2024-01-09 12:38:54 +0100 : Designate HV.1.9 (S:N211I, S:T1117I, New Zealand)
5f780df - Cornelius Roemer, 2024-01-09 12:41:21 +0100 : Designate HV.1.10 (S:R452W, USA)
4fc3a3c - Cornelius Roemer, 2024-01-09 12:43:41 +0100 : Designate JN.1.5 (ORF1b:V1271T, Singapore/Malaysia/Indonesia, from #2419)
688fcf1 - Cornelius Roemer, 2024-01-09 12:56:15 +0100 : Designate XDD.1 (S:S704L) and XDD.1.1 (S:I584V)
c02a8bd - Cornelius Roemer, 2024-01-09 12:57:27 +0100 : Designate XDD.2 (S:T307I)
c584da4 - Cornelius Roemer, 2024-01-09 12:59:30 +0100 : Designate JN.2.2 (S:T572I, N:G25C, ORF1a:L3644F, Netherlands)
1ced272 - Cornelius Roemer, 2024-01-09 13:00:33 +0100 : Designate JN.2.3 (S:V193L, from #2442)
e6c531c - Cornelius Roemer, 2024-01-09 13:02:20 +0100 : Designate JN.2.4 (S:L242F, Sweden)
68c48ac - Cornelius Roemer, 2024-01-09 13:16:39 +0100 : Designate JN.2.5 (S:L455S, Canada, USA, Lithuania)
7511f5f - Cornelius Roemer, 2024-01-09 13:21:55 +0100 : Designate JN.1.1.2 (S:G181E, France)
f68bfad - Cornelius Roemer, 2024-01-09 13:52:17 +0100 : Designate HN.8 (S:ins248KRD, ORF1a:E2042D, not requiring S:494P, Haiti/USA, from #2438)
f240a76 - Cornelius Roemer, 2024-01-09 14:00:36 +0100 : Designate JN.1.1.3 (S:R346T, ORF1b:H2388Y, France/Sweden)
5625be4 - Cornelius Roemer, 2024-01-09 14:06:53 +0100 : Designate JN.1.6 (G22627A) and JN.1.6.1 (S:R346T, Sweden)
d86f724 - Cornelius Roemer, 2024-01-09 14:10:04 +0100 : Designate JN.1.7 (S:T572I, S:E1150D, USA/France)
ede4d8f - Cornelius Roemer, 2024-01-09 14:13:51 +0100 : Designate JN.1.8 (ORF7a:T28I) and JN.1.8.1 (S:T572I, USA/Denmark)
678e57c - Cornelius Roemer, 2024-01-09 14:15:51 +0100 : Designate JN.1.9 (S:Q183H, USA/UK/Canada)
9e6fcf5 - Cornelius Roemer, 2024-01-10 15:35:27 +0100 : Designate FW.1.1.1 (S:A684T, ORF1a:S2285F, ORF1a:K3353R, UK)
28b294f - Cornelius Roemer, 2024-01-10 15:41:30 +0100 : Designate HK.3.14 (S:A475V, ORF1b:2378T, England/Australia)
3e67b22 - Cornelius Roemer, 2024-01-10 16:02:27 +0100 : Designate XDM (Recombinant lineage of XDA, GW.5, XDA (breakpoints between 22107-22926 and 24047-25838), from sars-cov-2-variants/lineage-proposals#1163)
a1041ca - Cornelius Roemer, 2024-01-10 16:21:36 +0100 : Designate KK.1 (XBB.1.5.102.1.1.8.1, S:D1153H, Brazil/USA)
fc2ce2c - Cornelius Roemer, 2024-01-10 16:22:29 +0100 : Designate KK.2 (XBB.1.5.102.1.1.8.2, S:N481K, Brazil)
9b26d72 - Cornelius Roemer, 2024-01-10 20:19:52 +0100 : Designate KL.1 (HV.1.6.1.1, S:K444N, Canada) and KL.1.1 (S:H1101Y, Canada)
bec1039 - Cornelius Roemer, 2024-01-10 20:22:18 +0100 : Designate HV.1.11 (S:N450D, USA)
65d1e22 - Cornelius Roemer, 2024-01-11 15:53:08 +0100 : Designate JN.1.10 (S:T95I, USA/Canada)
1e13380 - Cornelius Roemer, 2024-01-11 15:57:58 +0100 : Designate JN.1.11 (S:V1104L, C7113T, India, from #2446)
63fdb80 - Cornelius Roemer, 2024-01-11 18:49:17 +0100 : Update lineage_notes.txt: fix for JN.1.11
2e4625a - aviczhl2, 2024-01-15 02:20:55 +0800 : add_5_ref_from_main_page_49_from_lineage_proposals
d17ffe9 - Cornelius Roemer, 2024-01-15 17:52:52 +0100 : Add extra HK.33, HK.34, HK.34.1 designations
87d92a1 - Yat-sing Ng, 2024-01-16 02:03:02 +0800 : Update lineage_notes.txt
cd3327a - Cornelius Roemer, 2024-01-16 19:35:17 +0100 : Designate XDN (Recombinant lineage of JN.1.1 and JD.1 (breakpoint between 24379 and 24989), from #2448)
2c80397 - Cornelius Roemer, 2024-01-16 19:44:50 +0100 : Designate XDP (Recombinant lineage of JN.1.4 and FL.15 (breakpoint between 26834 and 27809), from #2451)
bc21f6f - Cornelius Roemer, 2024-01-16 20:00:28 +0100 : Designate JN.3.2 (N:H300Y, ORF1a:P892S) and JN.3.2.1 (S:F456V, N:S327L)
b3b812d - Angie Hinrichs, 2024-01-16 11:57:28 -0800 : Merge pull request #2457 from aviczhl2/master
57b0226 - Angie Hinrichs, 2024-01-16 12:10:31 -0800 : Merge pull request #2460 from Over-There-Is/patch-5

Assets 2
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