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XCY: EG.5.1.3/GK.4 or GK.3.1 recombinant(52H+Flip+475V) (11 seqs, 4 countries) #887

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xz-keg opened this issue Sep 30, 2023 · 6 comments
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XCY: EG.5.1.3/GK.4 or GK.3.1 recombinant(52H+Flip+475V) (11 seqs, 4 countries) #887

xz-keg opened this issue Sep 30, 2023 · 6 comments
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designated FLip = S:L455F / S:F456L recombinant S:52 S:475 XCY
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XCY

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@xz-keg
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xz-keg commented Sep 30, 2023 •
edited by FedeGueli
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XBB.1.5+C1889T,C2334T, G5720A,C9693T, C12789T, A16878T, A18492G，G21718T,C22624T,G22927T,T22928C, C22986T, A25045G,C27059T,C28005T

Orf1a:R542C,A690V,G1819S,A3143V,T4175I
S:Q52H,L455F,F456L,A475V
Orf8:P38S

C1889T,C2334T, G5720A,C9693T, C12789T, A16878T, A18492G，G21718T from EG.5.1.3
C22624T,G22927T,T22928C, C22986T, A25045G,C27059T,C28005T from GK.4 or GK.3.1

EG.5.1.3--GK.4 or GK.3.1
Breakpoint between 21719 and 22569 (Breakpoint on S)

GISAID query: A25045G,G21718T,C22986T
No. of seqs: 5(France)

First: EPI_ISL_18294427, 2023-9-11
Latest: EPI_ISL_18327250, 2023-9-18

usher

image

Rapid overview (edited):
Schermata 2023-10-04 alle 06 31 10
@oobb45729 oobb45729 mentioned this issue Sep 30, 2023
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@xz-keg xz-keg changed the title EG.5.1.3/GK.4 recombinant(52H+Flip+475V) (5 seqs, France) EG.5.1.3/GK.4 or GK.3.1 recombinant(52H+Flip+475V) (5 seqs, France) Oct 1, 2023
@FedeGueli FedeGueli changed the title EG.5.1.3/GK.4 or GK.3.1 recombinant(52H+Flip+475V) (5 seqs, France) EG.5.1.3/GK.4 or GK.3.1 recombinant(52H+Flip+475V) (6 seqs, France,Italy) Oct 3, 2023
@FedeGueli
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+1 Italy, new country

@xz-keg
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xz-keg commented Oct 4, 2023

Also in Spain now.

@xz-keg xz-keg changed the title EG.5.1.3/GK.4 or GK.3.1 recombinant(52H+Flip+475V) (6 seqs, France,Italy) EG.5.1.3/GK.4 or GK.3.1 recombinant(52H+Flip+475V) (8 seqs, 3 countries) Oct 4, 2023
@FedeGueli
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Ping @corneliusroemer this is likely very fast. i suggest an eye from you on it.

@corneliusroemer
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Just found this one independently! Thanks for having investigated already. Will take a closer look at the new sequences that aren't in my Usher tree yet.

@xz-keg
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xz-keg commented Oct 11, 2023

+1 USA.

@xz-keg xz-keg changed the title EG.5.1.3/GK.4 or GK.3.1 recombinant(52H+Flip+475V) (8 seqs, 3 countries) EG.5.1.3/GK.4 or GK.3.1 recombinant(52H+Flip+475V) (9 seqs, 4 countries) Oct 11, 2023
@xz-keg xz-keg changed the title EG.5.1.3/GK.4 or GK.3.1 recombinant(52H+Flip+475V) (9 seqs, 4 countries) EG.5.1.3/GK.4 or GK.3.1 recombinant(52H+Flip+475V) (11 seqs, 4 countries) Oct 14, 2023
@FedeGueli FedeGueli added this to the XCY milestone Oct 16, 2023
@FedeGueli FedeGueli added the XCY label Oct 16, 2023
@JosetteSchoenma
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XCY

@xz-keg xz-keg changed the title EG.5.1.3/GK.4 or GK.3.1 recombinant(52H+Flip+475V) (11 seqs, 4 countries) XCY: EG.5.1.3/GK.4 or GK.3.1 recombinant(52H+Flip+475V) (11 seqs, 4 countries) Oct 16, 2023
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