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94 Open 2,292 Closed
94 Open 2,292 Closed
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Issues list

LF.7.3 + S:D228E ( 8 Seqs, Kenya, Canada, NY) 10% Prevalence in Kenya after Nov 15 Emerged in an undersampled area Actual infection toll may be much larger than number of sequences suggest High local prevalence Lineage that apparently gained high prevalence in one country or region LF.7 S:228
#2386 opened Jan 26, 2025 by FedeGueli
Jn.1. + 572I underwent a mini saltation in a Cluster or a Chronic reverting S:S455L back to BA.2.86 and got S:F565L. Likely single chronically infected patient? Likely a chronically infected patient ORF9b S:455 S:565 S:572
#2385 opened Jan 26, 2025 by FedeGueli
Another hidden lineage : JN.1.18 plus 435S and 456L and BA.2 defining N:S413S reversion appeared in Mauritius (3) FLiRT FLiRT is an Acronym for S:R346T + S:F456L Lineage defining mutation mutated/reverted S:435
#2384 opened Jan 26, 2025 by FedeGueli
MC.16+S:V83I(53 seqs, >10 places) KP.3.1.1 S:83
#2383 opened Jan 25, 2025 by xz-keg
CH.1.1.8 saltation, 4 unique patients, Ireland, Dec 2024 CH.1.1 Saltation Lineage with multiple AA/Nuc mutations
#2382 opened Jan 23, 2025 by Sinickle
2
LF.7.1.2+Orf1a:L2447I+S:L1143F(6 seqs, 3 places) LF.7 S:67 S:475 s:1143
#2381 opened Jan 23, 2025 by xz-keg
NB.1 + Orf1a:A117T branch with S:M177I circulating in Singapore and California (10) Branch NB.1 S:177
#2380 opened Jan 22, 2025 by FedeGueli
Four LB.1.3 +S:T376S branches with S:H445R in South Africa LB.1 Multiple lineages S:376 S:445
#2379 opened Jan 22, 2025 by FedeGueli
2
XEF got S:H445P in Singapore (2) S:445 XEF
#2378 opened Jan 20, 2025 by FedeGueli
XEL+Orf1a:F586S+S:M177T(28 seqs, 8 places) S:177 XEL
#2377 opened Jan 19, 2025 by xz-keg
1
KP.3.1.1+Orf1a:H3580Y,S:A435S(17 seqs, >10 places) KP.3.1.1 Rapid review needed S:435
#2376 opened Jan 19, 2025 by xz-keg
1
Duplicate XEC branch on usher Usher Issues with usher related problems
#2375 opened Jan 19, 2025 by xz-keg
2
MC.10.1+S:R346T(18 seqs, 5 places) MC.10.1 Rapid review needed S:346
#2374 opened Jan 19, 2025 by xz-keg
1
Possible recombinant of JN.1.67.1* +S:K478T rev and LB.1.3* (6 seqs in China) DeFLiRT S:S31/F32-+S:R346T+S:F456L Emerged in an undersampled area Actual infection toll may be much larger than number of sequences suggest recombinant S:183 S:435 S:478 S:1264
#2373 opened Jan 19, 2025 by HynnSpylor
3
Another hidden lineage circulating likely in Africa during the past autumn : LF.7.3+ S:L117I + S:N487D (1, Uganda) Emerged in an undersampled area Actual infection toll may be much larger than number of sequences suggest LF.7 S:487
#2372 opened Jan 18, 2025 by FedeGueli
LF.7.3 + S:T385I (7 US, Kenya 15% prevalence after Nov 20) Emerged in an undersampled area Actual infection toll may be much larger than number of sequences suggest High local prevalence Lineage that apparently gained high prevalence in one country or region LF.7 s:385
#2371 opened Jan 18, 2025 by FedeGueli
1
KP.3.1.1 + S:I1169F (16) recently acquired S:V143A andS:K478E (3) KP.3.1.1 S:143 S:478 S:1169
#2370 opened Jan 18, 2025 by FedeGueli
XEN+S:R683Q(6 seqs, 4 places) FCS XEN
#2369 opened Jan 16, 2025 by xz-keg
KP.3.1.1+Orf1a:A2128V,P959S,V1393M+S:T572I(25 seqs, 4 places) KP.3.1.1 S:572
#2368 opened Jan 15, 2025 by xz-keg
3
KP.3.1.1+Orf8:D34G+S:Q677H,R683Q(6 seqs, 3 places) FCS KP.3.1.1 S:672 s:677 S:683
#2367 opened Jan 15, 2025 by xz-keg
1
KP.3.1.1+S:A1174V(17 seqs, 3 places) KP.3.1.1 Rapid review needed S:1174
#2366 opened Jan 15, 2025 by xz-keg
1
MC.1 + S:Q675R (23, Aus, Japan, NZL,Canada, Ireland) MC.1 S:675
#2364 opened Jan 13, 2025 by FedeGueli
2
Multiple NB.1+S:R346T branches Multiple lineages NB.1 Rapid review needed S:346 Usher Issues with usher related problems
#2363 opened Jan 12, 2025 by xz-keg
5
KP.2.2 + S:T22N + S:L56V + S:L441V (4 , 2 Places) 441 KP.2.2 S:22 S:56
#2362 opened Jan 11, 2025 by FedeGueli
1
LF.7.1+S:478R(7 seqs, 6 places) LF.7 S:478 Unclear tree Tree not much clear with reversions or flip/flop mutations
#2361 opened Jan 11, 2025 by xz-keg
1
ProTip! What’s not been updated in a month: updated:<2024-12-26.