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XDC: HK.3/XBB.1.16 recombinant(20 seqs, 3 countries) #902

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xz-keg opened this issue Oct 1, 2023 · 5 comments
Closed

XDC: HK.3/XBB.1.16 recombinant(20 seqs, 3 countries) #902

xz-keg opened this issue Oct 1, 2023 · 5 comments
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@xz-keg
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xz-keg commented Oct 1, 2023

EG.5.1.1+C2110T,C15763T, C21036T,G22927T,C27507A(rev),A28447G,C29386T,T29625C(rev)

S:L455F
Orf9b:N55S
Orf10:F23S(rev)

C2110T,C15763T, C21036T,G22927T from a EG.5.1.1 branch with T28251C,A28254C and G22927T, shall be HK.3+late-Orf8 transform
C27507A(rev),A28447G,C29386T,T29625C(rev) from XBB.1.16

HK.3--XBB.1.16
Breakpoint between 22996 and 27506

GISAID query: C2110T,C15763T,G22927T,C29386T
No. of seqs: 9( China 8, Singapore 1)

First: EPI_ISL_18324223, Yunnan, 2023-9-3
Latest: EPI_ISL_18307074, Singapore, 2023-9-18

usher
image

usher for HK.3-donor
image

Rapid overview(edited):
Schermata 2023-10-02 alle 12 40 19

@FedeGueli
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thank you great catch.
ping @corneliusroemer potentially a very good one , still mostly confined in Yunnan

@xz-keg
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xz-keg commented Oct 6, 2023

+1 Singapore from Malaysia

@xz-keg xz-keg changed the title HK.3/XBB.1.16 recombinant(9 seqs, 2 countries) HK.3/XBB.1.16 recombinant(10 seqs, 3 countries) Oct 6, 2023
@FedeGueli FedeGueli changed the title HK.3/XBB.1.16 recombinant(10 seqs, 3 countries) HK.3/XBB.1.16 recombinant(13 seqs, 3 countries) Oct 9, 2023
@FedeGueli
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  • 3 singapore

@FedeGueli FedeGueli added To be proposed Green light for proposal and removed Rapid review needed labels Oct 9, 2023
@FedeGueli
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Please propose it when 25 seqs and 5 countries

@xz-keg xz-keg changed the title HK.3/XBB.1.16 recombinant(13 seqs, 3 countries) HK.3/XBB.1.16 recombinant(14 seqs, 3 countries) Oct 12, 2023
@xz-keg xz-keg changed the title HK.3/XBB.1.16 recombinant(14 seqs, 3 countries) HK.3/XBB.1.16 recombinant(17 seqs, 3 countries) Oct 14, 2023
@xz-keg xz-keg changed the title HK.3/XBB.1.16 recombinant(17 seqs, 3 countries) HK.3/XBB.1.16 recombinant(20 seqs, 3 countries) Oct 17, 2023
@FedeGueli FedeGueli changed the title HK.3/XBB.1.16 recombinant(20 seqs, 3 countries) XDC: HK.3/XBB.1.16 recombinant(20 seqs, 3 countries) Oct 18, 2023
@FedeGueli FedeGueli added XDC and removed To be proposed Green light for proposal labels Oct 18, 2023
@FedeGueli FedeGueli added this to the XDC milestone Oct 18, 2023
@FedeGueli
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Designated XDC via cov-lineages/pango-designation@1bf4123

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