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GK.1+Orf1a:I573V,Orf1a:T4129I and Orf9b:T95M(139 seqs, 17 countries ) and its two branches of S:A475V (5 and 7 samples) #2375

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xz-keg opened this issue Nov 14, 2023 · 0 comments

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@xz-keg
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xz-keg commented Nov 14, 2023

From sars-cov-2-variants/lineage-proposals#814

GK.1+A1982G(Orf1a:I573V)+T8167C+C12651T, C28567T(Orf1a:T4129I, Orf9b:T95M)

GISAID query: C12651T, C28567T,T8167C
No. of seqs: 139(Australia 2 Austria 1 Belgium 1 Brazil 53 Canada 15 Denmark 4 France 2 Ireland 2 Israel 1 Italy 1 Netherlands 4 Peru 1
Phillipines 1 UK 1 Sweden 2 USA 48(1 from Germany 1 from Brazil)

First:EPI_ISL_18291530, Brazil, 2023-6-15
Latest: EPI_ISL_18468640, Netherlands, 2023-10-30

Query for S:A475V branch 1: C12651T, C28567T,C22986T,-T7049C (5 seqs, USA, Phillipines, Brazil)

Query for S:A475V branch 2: C20762T, C22986T, C27442T (7 seqs, Denmark, Austria, Netherlands, Belgium)

Orf9b:T95M was in BA.5.1.33, and also appears in a large undesignated Brazilian BA.5 #1041

usher

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