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simonbray
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Apr 8, 2020
simonbray
commented
- I have read the guidelines for bioconda recipes.
- This PR adds a new recipe.
- AFAIK, this recipe is directly relevant to the biological sciences (otherwise, please submit to the more general purpose conda-forge channel).
- This PR updates an existing recipe.
- This PR does something else (explain below).
Merge PR #21044, commits were: * switch to base matplotlib
Merge PR #21037, commits were: * Update peddy to 0.4.6
Merge PR #21045, commits were: * Update igv to 2.8.2
Merge PR #21051, commits were: * Update snakemake to 5.12.1
Merge PR #21021, commits were: * Update meta.yaml * Merge branch 'master' into pgcgap * Update PGCGAP to v1.0.11 * Merge branch 'pgcgap' of https://github.com/liaochenlanruo/bioconda-recipes into pgcgap * canu>=1.8 * Merge branch 'master' into pgcgap * Update meta.yaml * add modeltest-ng and raxml-ng * Merge branch 'master' into pgcgap * add circlator and unicycler * Merge branch 'master' into pgcgap * update pgcgap to v1.0.10 * add abricate * Merge pull request #6 from liaochenlanruo/master update pgcgap branch * Merge pull request #5 from bioconda/master update local files * add gubbins 2.3.4 * Update meta.yaml * Update meta.yaml * Update meta.yaml * add gubbins 2.3.4 * add gubbins * combination of roary and orthofinder * Update meta.yaml * Merge pull request #4 from liaochenlanruo/master update local branch * Merge pull request #3 from bioconda/master update local fork * Merge pull request #2 from bioconda/master update fork * Update meta.yaml * Update meta.yaml * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master update local recipes
Merge PR #18701, commits were: * Update meta.yaml * pyopenms * openms-thirdparty * buildnr * libopenms * rm * openms-tools * build nr * rm skip * build nr pyopenms * Merge branch 'add/easypqp' of https://github.com/Leon-Bichmann/bioconda-recipes into add/easypqp * build numbers * Merge branch 'master' into add/easypqp * Merge branch 'add/easypqp' of https://github.com/Leon-Bichmann/bioconda-recipes into add/easypqp * number * Merge branch 'master' into add/easypqp * openms do not skip py3k * Merge branch 'add/easypqp' of https://github.com/Leon-Bichmann/bioconda-recipes into add/easypqp * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes into add/easypqp * autowrap 0.18.1 * Update meta.yaml * pyopenms build number * pyopenms to python3 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes into add/easypqp * >= * python3 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes into add/easypqp * remove fn * noarch * added easypqp recipe
Merge PR #21042, commits were: * update to latest commit * update to latest commit (no recent releases) * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * merge from upstream * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of github.com:jvolkening/bioconda-recipes * add about:license_file * add missing license file * update perl-biox-seq version
Merge PR #21052, commits were: * Update discosnp to 2.4.4
Merge PR #21048, commits were: * Update hyphy to 2.5.8
Merge PR #21047, commits were: * Add r-loomr
Merge PR #21046, commits were: * Fix URL * Add lamassemble
Merge PR #21060, commits were: * Update chromosight to 0.9.3
Merge PR #21043, commits were: * Update synapseclient to 2.0.0
Merge PR #21057, commits were: * A new recipe for BtToxin_scanner * Merge pull request #9 from bioconda/master update local * Merge pull request #7 from bioconda/master update local master * Merge pull request #5 from bioconda/master update local files * Merge pull request #3 from bioconda/master update local fork * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master update local recipes
Merge PR #21058, commits were: * Update snakemake to 5.12.2
Merge PR #21059, commits were: * Update easypqp to 0.1.5
Merge PR #21062, commits were: * Update snakemake to 5.12.3
* updated dependencies of pgt3.3 * fix matplotlib * matplotlib → matplotlib-base See #19996 Co-authored-by: Marcel Martin <[email protected]>
Merge PR #21065, commits were: * Update kcalign to 0.5.7
Merge PR #21066, commits were: * tansindel update meta.yaml Remove hash variables * transindel initial recipe transIndel is used to detect indels (insertions and deletions) from DNA-seq or RNA-seq data by parsing chimeric alignments from BWA-MEM https://github.com/cauyrd/transIndel Alternative to pindel and fermikit.
Merge PR #21075, commits were: * Update cgpbigwig to 1.2.0
Merge PR #21061, commits were: * Update scelvis to 0.8.3
Merge PR #21063, commits were: * Update mpa-server to 3.4
Merge PR #21079, commits were: * bioconda-utils: update to conda-build=3.19.1 * Update bioconda-utils to 0.16.12
Merge PR #21068, commits were: * Update chromosight to 0.9.5 * Update chromosight to 0.9.4
Merge PR #21071, commits were: * Update pyrle to 0.0.31
Merge PR #21070, commits were: * Update pyranges to 0.0.77
Merge PR #21069, commits were: * Update famsa to 1.5.12
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Merge PR bioconda#26284, commits were: * Update meta.yaml * Bump version * Merge pull request #2 from bioconda/master Get latest versions * Merge pull request #1 from bioconda/master Get latest GATK recipe
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Merge PR bioconda#26408, commits were: * update dRep dependencies * update drep dependencies * update drep dependencies * Merge pull request #1 from bioconda/master Update
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Merge PR bioconda#29152, commits were: * Update version to 0.0.5 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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Merge PR bioconda#29151, commits were: * Update version to 0.0.5 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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Merge PR bioconda#29148, commits were: * Update version to 0.0.5 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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Merge PR bioconda#29147, commits were: * Update version to 0.0.6 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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Merge PR bioconda#29149, commits were: * Update version to 0.0.5 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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Merge PR bioconda#29182, commits were: * Update meta.yaml * md5 -> SHA256 * Update meta.yaml * Merge branch 'bioconda:master' into master * Merge pull request #2 from bioconda/master Get latest versions * Merge pull request #1 from bioconda/master Get latest GATK recipe
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Merge PR bioconda#29242, commits were: * Add font requirements * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge pull request #2 from bioconda/master Get latest versions * Merge pull request #1 from bioconda/master Get latest GATK recipe
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Merge PR bioconda#29396, commits were: * Update version to 0.0.7 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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Merge PR bioconda#29501, commits were: * Update tool version to 0.0.6 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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Aug 31, 2021
Merge PR bioconda#29546, commits were: * Increase version to 0.0.7 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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Merge PR bioconda#29570, commits were: * Update version to 0.0.6 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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Merge PR bioconda#29568, commits were: * Update tool version to 0.0.6 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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Merge PR bioconda#29665, commits were: * Update version * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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Merge PR bioconda#29575, commits were: * Update meta.yaml add the version number to each dependency * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Merge branch 'master' of https://github.com/liaochenlanruo/bioconda-recipes into pgcgap * Merge branch 'bioconda:master' into master * Update meta.yaml * Merge branch 'pgcgap' of https://github.com/liaochenlanruo/bioconda-recipes into pgcgap * add pgcgap to the BtToxin_Digger repo * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update build-fail-blacklist * Update BtToxin_Digger to v1.0.9 * Merge branch 'master' of https://github.com/liaochenlanruo/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'bioconda:master' into master * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request bioconda#3 from bioconda/master Update local * Merge pull request #1 from bioconda/master Update local
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Aug 31, 2021
Merge PR bioconda#30247, commits were: * Fix build * Update MALT to 0.53 * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge pull request #2 from bioconda/master Get latest versions * Merge pull request #1 from bioconda/master Get latest GATK recipe
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Merge PR bioconda#30250, commits were: * Update version * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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Merge PR bioconda#30252, commits were: * Update version * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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Sep 9, 2021
Merge PR bioconda#28473, commits were: * Add ProteomIQon.PSMStatistics * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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Sep 9, 2021
Merge PR bioconda#28468, commits were: * Add ProteomIQon.PeptideSpectrumMatching * Merge pull request #1 from bioconda/master Update Fork
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Sep 9, 2021
Merge PR bioconda#28504, commits were: * Add ProteomIQon.MzMLToMzLite * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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Sep 9, 2021
Merge PR bioconda#28503, commits were: * Add ProteomIQon.ProteinInference * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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Merge PR bioconda#28500, commits were: * Add ProteomIQon.PSMBasedQuantification * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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Sep 9, 2021
Merge PR bioconda#28586, commits were: * Update meta.yaml * Update PGCGAP to v1.0.29 * Merge branch 'pgcgap' of https://github.com/liaochenlanruo/bioconda-recipes into pgcgap * Merge branch 'bioconda:master' into pgcgap * Update meta.yaml debug of the main scripts * Update meta.yaml * Merge branch 'pgcgap' of https://github.com/liaochenlanruo/bioconda-recipes into pgcgap * Update meta.yaml * Update build-fail-blacklist * Merge branch 'master' into pgcgap * Update meta.yaml * Update PGCGAP to v1.0.28 * Update meta.yaml * Merge remote-tracking branch 'upstream/master' into pgcgap * Update pgcgap to v1.0.27 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request bioconda#3 from bioconda/master Update local * Merge pull request #1 from bioconda/master Update local
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Merge PR bioconda#28665, commits were: * Update version to 0.0.4 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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Sep 9, 2021
Merge PR bioconda#28663, commits were: * Update version to 0.0.4 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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Sep 9, 2021
Merge PR bioconda#28664, commits were: * Update version to 0.0.4 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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Sep 9, 2021
Merge PR bioconda#28908, commits were: * Update meta.yaml * Merge branch 'pgcgap' of https://github.com/liaochenlanruo/bioconda-recipes into pgcgap * add pgcgap to the BtToxin_Digger repo * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update build-fail-blacklist * Update BtToxin_Digger to v1.0.9 * Merge branch 'master' of https://github.com/liaochenlanruo/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'bioconda:master' into master * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request bioconda#3 from bioconda/master Update local * Merge pull request #1 from bioconda/master Update local
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Sep 9, 2021
Merge PR bioconda#28959, commits were: * pin htslib to 1.11 * pin htslib to 1.11 * bump htslib version * update htslib version for shapeit4 * Merge pull request #1 from carjed/patch-1 Update shapeit4 to v4.2.1 * Update shapeit4 to v4.2.1 Recommended by developer to resolve `invalid pointer` error when using shapeit4 through conda (see odelaneau/shapeit4#54 (comment)) * Bump to latest version (4.2.1) Recommended by developer to resolve `invalid pointer` error odelaneau/shapeit4#54 (comment)
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