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Merge PR bioconda#28473, commits were: * Add ProteomIQon.PSMStatistics * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master Update Fork
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{% set version = "0.0.3" %} | ||
{% set sha256 = "e971332d4384afad0e22ec5459d30dd020942045afcef950bb229c052d912d77" %} | ||
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package: | ||
name: proteomiqon-psmstatistics | ||
version: '{{ version }}' | ||
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source: | ||
url: https://www.nuget.org/api/v2/package/ProteomIQon.PSMStatistics/{{ version }} | ||
sha256: '{{ sha256 }}' | ||
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build: | ||
noarch: generic | ||
number: 0 | ||
script: | ||
- dotnet tool install --add-source $SRC_DIR --tool-path $PREFIX/bin --version {{ version }} ProteomIQon.PSMStatistics | ||
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requirements: | ||
host: | ||
- dotnet-sdk | ||
run: | ||
- dotnet-runtime | ||
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test: | ||
commands: | ||
- proteomiqon-psmstatistics --help | ||
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about: | ||
home: https://csbiology.github.io/ProteomIQon/ | ||
license: MIT | ||
summary: The PSMStatistics tool utilizes semi supervised machine learning techniques to integrate search engine scores as well as the mentioned quality scores into one single consensus score. | ||
description: | | ||
To measure the similarity of in silico generated spectra and measured MS/MS scans we use our own implementations of three established search enginge scores: | ||
SEQUEST, Andromeda and XTandem. Additionally, we also record quality control parameters such as the mass difference between the precursor ion and the theoretically | ||
calulated mass or the uniquness of each score in comparison to 'competing' peptides within the search space. The PSMStatistics tool utilizes semi supervised machine | ||
learning techniques to integrate search engine scores as well as the mentioned quality scores into one single consensus score. | ||
Since the search space is extended by so called decoys - reversed counterparts of peptides within the search space - we can estimate the distribution of 'true negatives' and | ||
calculate local (PEP values) and global (Q values) false discovery rates at each consensus score. The reported peptides at user defined local and global FDR cutoffs can then | ||
be used as inputs for any downstream analysis be it ProteinInference or PSMBasedQuantification. | ||
dev_url: https://github.com/CSBiology/ProteomIQon | ||
doc_url: https://csbiology.github.io/ProteomIQon/tools/PSMStatistics.html |