easypqp recipe

[Leon-Bichmann]

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• I have read the guidelines for bioconda recipes.
• This PR adds a new recipe.
• AFAIK, this recipe is directly relevant to the biological sciences (otherwise, please submit to the more general purpose conda-forge channel).
• This PR updates an existing recipe.
• This PR does something else (explain below).

[Leon-Bichmann]

In this PR I am trying to add easypqp a new python packaged tool to generate spectral libraries for biological mass spectrometry - proteomics .

[Leon-Bichmann]

@dpryan79 I think the problem is the current pyopenms depencency on python2. Do you agree?

[dpryan79]

Yeah, for some reason I thought pyopenms needed python 2.

[Leon-Bichmann]

yeah I hope it passes, autowrap apparently has been causing some problems for python3. Thats why I fixed the version 0.19.0 now.

[dpryan79]

autowrap 0.19.0 doesn't seem to be available in conda yet. There are some open PRs to update it, I'll see if I can "encourage" them to be merged

[Leon-Bichmann]

Is it possible to add it? I don't see an autowrap recipe in bioconda

[Leon-Bichmann]

We just figured, it should work with the 0.18.1 version of autowrap as well.

[dpryan79]

autowrap 0.20.0 just got merged in on conda-forge, so if you do end up needing a newer version it's there now.

[Leon-Bichmann]

for some reason openms 2.4 is still depending on python2 ...

[dpryan79]

Should it need python at all?

[jpfeuffer]

I don't think OpenMS should need python. Maybe someone had pyopenms in mind while designing the OpenMS recipe.

It seems like Qt is trying to find OpenGL but does not succeed. I am not sure why it is looking for the QtGui target at all when -WITH_GUI=Off is set.. hmm..

In general, @Leon-Bichmann I guess you have to sync your commit with the changes in the openms PR. Otherwise you get into trouble with Xerces and Boost.

[Leon-Bichmann]

@BiocondaBot update

[dpryan79]

@bioconda-bot please update

You have to say "please" :)

[Leon-Bichmann]

@dpryan79 is this ready for a merge?

[dpryan79]

@bioconda-bot please fetch artifacts

[BiocondaBot]

Package(s) built on CircleCI are ready for inspection:

Arch	Package	Repodata
noarch	easypqp-0.1.0-py_0.tar.bz2	repodata.json

---

You may also use conda to install these:

• For packages on noarch:

conda install -c https://100136-42372094-gh.circle-artifacts.com/0/tmp/artifacts/packages <package name>

---

Docker image(s) built:

Package	Tag	Install with docker
easypqp	0.1.0--py_0	show curl "https://100136-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/easypqp%3A0.1.0--py_0.tar.gz" | gzip -dc | docker load

[dpryan79]

@bioconda-bot please merge

[BiocondaBot]

I will attempt to upload artifacts and merge this PR. This may take some time, please have patience.

[Leon-Bichmann]

awesome thx!