add snakemake remote depends #7
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…akemake remote() file support
added recipes for the moto and filechunkio dependencies needed for
snakemake remote() file support, via “conda skeleton pypi {moto,
filechunkio}”, as well as boto, which is currently a conda package
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It seems a few more dependencies are needed for moto itself, to be added. |
…ict}
added recipes for the moto dependencies: {httplib2, httpretty,
xmltodict}. The recipe for httpretty needed some manual intervention
since the httpretty setup.py file parses its own requirements file in a
way that is not guaranteed to produce clean output
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Hi Chris, Thanks, |
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Hi, |
… into ct-add-snakemake-remote-depends
…to osx-whitelist.txt
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This seems to have an issue with dependency chaining. I'll submit the recipes individually in the right order, with a separate PR for each. |
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bittremieux
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Sep 10, 2019
Addresses [spectrum_utils/#7](bittremieux/spectrum_utils#7).
BiocondaBot
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Mar 24, 2020
Merge PR #21057, commits were: * A new recipe for BtToxin_scanner * Merge pull request #9 from bioconda/master update local * Merge pull request #7 from bioconda/master update local master * Merge pull request #5 from bioconda/master update local files * Merge pull request #3 from bioconda/master update local fork * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master update local recipes
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Jun 19, 2020
Merge PR #22707, commits were: * Update meta.yaml * Update meta.yaml * Update meta.yaml * Merge branch 'master' into pgcgap * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Debug why there are python host dependencies getting pulled in * Update meta.yaml * Update pgcgap to v1.0.18 * Merge pull request #16 from bioconda/master update local master * Merge pull request #14 from bioconda/master Update local master * Merge pull request #9 from bioconda/master update local * Merge pull request #7 from bioconda/master update local master * Merge pull request #5 from bioconda/master update local files * Merge pull request #3 from bioconda/master update local fork * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master update local recipes
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Oct 29, 2022
Merge PR #37080, commits were: * Update meta.yaml * Update meta.yaml * Update meta.yaml * Merge branch 'master' into master * Merge branch 'master' into master * Merge pull request #8 from marcDabad/cvlr_package new emas commit * new emas commit * Merge pull request #7 from marcDabad/cvlr_package fix variable * fix variable * Merge branch 'master' into master * Merge pull request #6 from marcDabad/cvlr_package gcc 2 cc * gcc 2 cc * Merge branch 'master' into master * Merge pull request #5 from marcDabad/cvlr_package passes tests in local * passes tests in local * Merge branch 'master' into master * Merge pull request #4 from marcDabad/cvlr_package cc * cc * Merge pull request #3 from marcDabad/cvlr_package Cvlr package * Merge branch 'master' into master * Merge branch 'cvlr_package' of https://github.com/marcDabad/bioconda-recipes into cvlr_package * cvlr_recipe * Merge pull request #2 from marcDabad/cvlr_package Cvlr package * Merge branch 'master' into cvlr_package * Merge pull request #1 from bioconda/master update * cvlr_recipe
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This includes conda skeleton receipes for
motoandfilechunkio, two PyPi packages related to Snakemake remote file handling. It adds these andbotoas dependencies to the Snakemakemeta.yaml. The packagebotois used for AWS calls,motois used for mocking out the live AWS API for local testing, andfilechunkiois used for chunking files for multi-part upload.