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* PacBio: constrain pbcommand to py3.7 * PacBio: constrain pbcore to py3.7
Merge PR #21986, commits were: * Update pbcoretools to 0.8.1
Merge PR #21992, commits were: * Update moabs to 1.3.9.0
Merge PR #21997, commits were: * Update recipes/bio-ting/meta.yaml Co-authored-by: Johannes Köster <[email protected]> * Update meta.yaml * Update meta.yaml * Update meta.yaml * Fix url * Update meta.yaml * Update meta.yaml * Create ting recipe
Merge PR #22002, commits were: * Update snakemake to 5.17.0
Merge PR #22006, commits were: * Update meta.yaml * Update meta.yaml * Update bioconda-utils to 0.16.15
Merge PR #22015, commits were: * Update pygenometracks to 3.4
Merge PR #22018, commits were: * Update hyphy to 2.5.14
Merge PR #21999, commits were: * Update meta.yaml * Add the test_run.sh * Add a bash script for test * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Adding docking_py
Merge PR #22017, commits were: * Update chromosight to 1.1.0
Merge PR #22007, commits were: * Update orthofinder to 2.3.12
Merge PR #22016, commits were: * Update varda2-client to 0.8
Merge PR #22004, commits were: * Update meta.yaml * Update socru to 2.2.4
Merge PR #22003, commits were: * Update meta.yaml * Update meta.yaml * Create LICENSE * Update meta.yaml * Update clust to 1.10.10
Merge PR #22026, commits were: * Update cromshell to 0.4.2
Merge PR #22021, commits were: * update dependencies * specify pytools version * update pangolin to v1.1.11
Merge PR #22023, commits were: * Update meta.yaml go back to which Bandage instead of Bandage -h * Update meta.yaml * Update meta.yaml add mesa-libgl-cos6-x86_64 because get error Bandage: error while loading shared libraries: libGL.so.1: cannot open shared object file: No such file or directory * increment build * updage test and fix recipe ( version Qt_5.12 not found (required by Bandage)
Merge PR #22014, commits were: * Add CompareM 0.1.1 * Add CompareM 0.1.1
Merge PR #22012, commits were: * add simplesam to bioconda * modified meta.yaml for simplesam * adding simplesam to bioconda
Merge PR #22025, commits were: * Update panaroo to 1.2.2
Merge PR #21989, commits were: * Update changeo to 1.0.0
Merge PR #21984, commits were: * Update presto to 0.6.0
Merge PR #22013, commits were: * Updated dependencies of GenMap because of conflicts on osx
Merge PR #22028, commits were: * Update bioconda-utils to 0.16.16
Merge PR #22031, commits were: * Update bioconda-utils to 0.16.17
Co-authored-by: Matt H <[email protected]>
Merge PR #22029, commits were: * reset build number * bump kraken2 2.0.8_beta -> 2.0.9_beta
Merge PR #22033, commits were: * updated unfazed * merge conflict resolved * updated unfazed with new tests, linting, bugfixes * updated unfazed with new tests, linting, bugfixes * fixed syntax error in meta.yaml * added recipe for new phasing tool * Merge remote-tracking branch 'upstream/master' * another shasum fix * Merge remote-tracking branch 'upstream/master' * matplotlib->matplotlib-base * updated shasum
Merge PR #22282, commits were: * Update dsk to 2.3.3
Merge PR #22277, commits were: * Update ncbi-vdb to 2.10.7
Merge PR #22275, commits were: * Update 0.4.0 to not use pandas >= 1
Merge PR #22266, commits were: * Update scprep to 1.0.5.post2
Merge PR #22274, commits were: * Fix syntax error * Update version requirements * Update scirpy to 0.2
Merge PR #22295, commits were: * update manually * new release to fix model name * update adpred release version to 1.2.5 * update master * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * fetch release 1.2.5 * update to adpred version 1.2.4 * update from upstream * version fixed saturated mutagenesis WT values * miniconda.sh changed? * updated version * working adpred including command-line tool * initial recipie for adpred * initial yaml file for adpred * Merge branch 'master' of https://github.com/aerijman/bioconda-recipes * new version
Merge PR #22307, commits were: * Update build number for 2019 * Update GMAP version to 2020.04.08
Merge PR #22313, commits were: * Add StringMeUp
Merge PR #22310, commits were: * Update meta.yaml * Add galru
Merge PR #22298, commits were: * Correct error in stark recipes * stark can't be build by clang * Add recipe for tools stark
Merge PR #22317, commits were: * Removes version specification from bifrost * Adds >=1.0.3 version for bifrost package requirement * Removes bifrost requirement from build packages * Updates meta.yaml for unitig-caller v1.1.0
Merge PR #22318, commits were: * increment build * update test
Merge PR #22326, commits were: * moabs: skip osx * moabs: update to 1.3.9.2
* Update genomepy to 0.8.2 * Try a docker pull * Update genomepy to 0.8.2 * fix python range Co-authored-by: Devon Ryan <[email protected]>
Merge PR #22341, commits were: * changing package name and adding description * updating package info * update version * updating libclangpath * updating install command * Added recipe for lorikeet
Merge PR #22301, commits were: * Merge branch 'master' into bump/fred2 * Update fred2 to 2.0.7
Merge PR #22303, commits were: * Merge branch 'master' into pangolin_update * Update Pangolin to v 1.1.4
Merge PR #22304, commits were: * Merge branch 'master' into bump/tiddit * Update tiddit to 2.12.0
Merge PR #22335, commits were: * Update moabs to 1.3.9.3
Merge PR #22331, commits were: * Update plastid to 0.5.1, added cython to run requirements * Update plastid to 0.5.1, removed from blacklist * Update plastid to 0.5.1 * Update plastid to 0.4.9dev for testing build
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Aug 10, 2020
Merge PR bioconda#22348, commits were: * Update meta.yaml * Merge pull request #2 from bioconda/master upstream * Create meta.yaml
simonbray
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Sep 4, 2020
Merge PR bioconda#23892, commits were: * Update SHA * Update meta.yaml * Update damageprofiler.py * Merge pull request #2 from bioconda/master Get latest bioconda version * Update meta.yaml * Update damageprofiler.py * Merge pull request #1 from bioconda/master Syncing to get latest base changes
simonbray
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Sep 4, 2020
Merge PR bioconda#24062, commits were: * Fix my own mistake * Update meta.yaml * Bump java versiona and add javafx lib Tested locally. MALT's bundled JRE actually includes Java 14? ``` openjdk 14.0.2 2020-07-14 OpenJDK Runtime Environment AdoptOpenJDK (build 14.0.2+12) OpenJDK 64-Bit Server VM AdoptOpenJDK (build 14.0.2+12, mixed mode) ``` * Merge pull request bioconda#3 from bioconda/master syncing * Update meta.yaml * Update build.sh * Update SHA * Update meta.yaml * Update damageprofiler.py * Merge pull request #2 from bioconda/master Get latest bioconda version * Update meta.yaml * Update damageprofiler.py * Merge pull request #1 from bioconda/master Syncing to get latest base changes
simonbray
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Jan 30, 2021
Merge PR bioconda#26284, commits were: * Update meta.yaml * Bump version * Merge pull request #2 from bioconda/master Get latest versions * Merge pull request #1 from bioconda/master Get latest GATK recipe
simonbray
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Aug 31, 2021
Merge PR bioconda#29182, commits were: * Update meta.yaml * md5 -> SHA256 * Update meta.yaml * Merge branch 'bioconda:master' into master * Merge pull request #2 from bioconda/master Get latest versions * Merge pull request #1 from bioconda/master Get latest GATK recipe
simonbray
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Aug 31, 2021
Merge PR bioconda#29242, commits were: * Add font requirements * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge pull request #2 from bioconda/master Get latest versions * Merge pull request #1 from bioconda/master Get latest GATK recipe
simonbray
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Aug 31, 2021
Merge PR bioconda#29688, commits were: * fixed sha256 #2 * fixed sha256 * update tasmanian
simonbray
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Aug 31, 2021
Merge PR bioconda#30247, commits were: * Fix build * Update MALT to 0.53 * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge branch 'bioconda:master' into master * Merge pull request #2 from bioconda/master Get latest versions * Merge pull request #1 from bioconda/master Get latest GATK recipe
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