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Update GMAP version to 2020.04.08 #22307

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merged 2 commits into from
May 25, 2020
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@npavlovikj npavlovikj commented May 25, 2020

Update GMAP recipe to the newest 2020.04.08 version.

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@BiocondaBot please fetch artifacts

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Package(s) built on CircleCI are ready for inspection:

Arch Package Repodata
linux-64 gmap-2019.09.12-pl526h2f06484_1.tar.bz2 repodata.json
linux-64 gmap-2020.04.08-pl526h1296035_0.tar.bz2 repodata.json
osx-64 gmap-2019.09.12-pl526h977ceac_1.tar.bz2 repodata.json
osx-64 gmap-2020.04.08-pl526hf29c6f4_0.tar.bz2 repodata.json

You may also use conda to install these:

  • For packages on linux-64:
conda install -c https://109462-42372094-gh.circle-artifacts.com/0/tmp/artifacts/packages <package name>
  • For packages on osx-64:
conda install -c https://109465-42372094-gh.circle-artifacts.com/0/tmp/artifacts/packages <package name>

Docker image(s) built:

Package Tag Install with docker
gmap 2019.09.12--pl526h2f06484_1
showcurl "https://109462-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/gmap%3A2019.09.12--pl526h2f06484_1.tar.gz" | gzip -dc | docker load
gmap 2020.04.08--pl526h1296035_0
showcurl "https://109462-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/gmap%3A2020.04.08--pl526h1296035_0.tar.gz" | gzip -dc | docker load

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@BiocondaBot please add label

@BiocondaBot BiocondaBot added the please review & merge set to ask for merge label May 25, 2020
@npavlovikj
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@BiocondaBot please merge

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I will attempt to upload artifacts and merge this PR. This may take some time, please have patience.

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Thank you for the approval @thanhleviet !

@BiocondaBot BiocondaBot merged commit 361a6df into bioconda:master May 25, 2020
@npavlovikj npavlovikj deleted the update_gmap branch May 25, 2020 21:00
@edgardomortiz
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Apologies if this is not the right place to report that the latest version of gmap 2020.04.08 in bioconda apparently wasn't compiled with zlib. I installed it in linux and the option --gunzip is not available.

@npavlovikj
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@edgardomortiz , thank you for reporting this! I did remove "zlib" as a dependency from the newest version assuming it is part of the compiler dependencies. I can definitely open another PR with the updates in a moment.

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Ok, I opened a PR, #22382 with the changes. I will let you know once the tests pass and the recipe is merged.

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Excellent, thank you very much

a-solovyev12 pushed a commit to ebi-gene-expression-group/bioconda-recipes that referenced this pull request Jun 29, 2020
Merge PR bioconda#22307, commits were: 
 * Update build number for 2019
 * Update GMAP version to 2020.04.08
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4 participants