updated from bioconda in fork #1
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pravs3683
commented
Jun 18, 2019
pravs3683
commented
- I have read the guidelines above.
- This PR adds a new recipe.
- This PR updates an existing recipe.
- This PR does something else (explain below).
* sartools1.6.8 * fixedError
Package uploads complete: [ci skip] - biocontainers/popdel:1.0.11--he860b03_0 - linux-64/popdel-1.0.11-he860b03_0.tar.bz2 - osx-64/popdel-1.0.11-h5c9b4e4_0.tar.bz2
Package uploads complete: [ci skip] - biocontainers/pycoqc:2.2.4--py_0 - noarch/pycoqc-2.2.4-py_0.tar.bz2
* New proteomics package triqler * Linter said to add noarch for packages without compiler * Add maintainer * remove empty
* Bump with font config for fastqc recipe * Bump miniasm once for GCC7 * Try removing the change in 0.4.6 as it introduced weird errors * Bump miniasm once for GCC7 * Try removing the change in 0.4.6 as it introduced weird errors * Remove trim_galore changes from branch * Remove miniasm changes from branch * Remove Seqan patching with 2.4.0 * Clean build.sh No more replacing Seqan with 2.4.0
Package uploads complete: [ci skip] - biocontainers/kmc:3.1.1--h76f5088_0 - linux-64/kmc-3.1.1-h76f5088_0.tar.bz2
Package uploads complete: [ci skip] - biocontainers/seroba:1.0.1--py_0 - noarch/seroba-1.0.1-py_0.tar.bz2 Co-authored-by: Natasha Pavlovikj <[email protected]> Co-authored-by: BiocondaBot <[email protected]>
Package uploads complete: [ci skip] - biocontainers/twobitreader:3.1.7--py_0 - noarch/twobitreader-3.1.7-py_0.tar.bz2 Co-authored-by: Natasha Pavlovikj <[email protected]>
Package uploads complete: [ci skip] - biocontainers/pyliftover:0.4--py_0 - noarch/pyliftover-0.4-py_0.tar.bz2 Co-authored-by: Natasha Pavlovikj <[email protected]>
* Tapestry v0.9.2 * Tapestry v0.9.2 add source_files * Tapestry v0.9.2 no unit test
Package uploads complete: [ci skip] - biocontainers/msproteomicstools:0.8.0--py27h3010b51_0 - linux-64/msproteomicstools-0.8.0-py27h3010b51_0.tar.bz2 - osx-64/msproteomicstools-0.8.0-py27h917ab60_0.tar.bz2 Co-authored-by: BiocondaBot <[email protected]> Co-authored-by: Natasha Pavlovikj <[email protected]> Co-authored-by: Andreas Sjödin <[email protected]>
Package uploads complete: [ci skip] - biocontainers/crossmap:0.3.4--pyh24bf2e0_0 - noarch/crossmap-0.3.4-pyh24bf2e0_0.tar.bz2 Co-authored-by: BiocondaBot <[email protected]> Co-authored-by: Natasha Pavlovikj <[email protected]>
Package uploads complete: [ci skip] - biocontainers/pylibseq:0.2.1--py37h6bb024c_0 - linux-64/pylibseq-0.2.1-py37h6bb024c_0.tar.bz2 - osx-64/pylibseq-0.2.1-py37h04f5b5a_0.tar.bz2 Co-authored-by: Natasha Pavlovikj <[email protected]>
These needed to be pinned higher to ensure new-enough versions of the packages are installed.
Package uploads complete: [ci skip] - biocontainers/salmon:0.14.0--h86b0361_0 - linux-64/salmon-0.14.0-h86b0361_0.tar.bz2 - osx-64/salmon-0.14.0-heb0d2e1_0.tar.bz2
Package uploads complete: [ci skip] - biocontainers/hint:2.1.7--py_0 - noarch/hint-2.1.7-py_0.tar.bz2
Package uploads complete: [ci skip] - biocontainers/sword:1.0.3--h6bb024c_0 - linux-64/sword-1.0.3-h6bb024c_0.tar.bz2 - osx-64/sword-1.0.3-h04f5b5a_0.tar.bz2
* bumping salmon to v0.14.0 * second build
Bump wub version to 0.4.0
* Added recipe for MetaPhlAn2.9 * Do not build on osx
* This is first commit to bioconda * this is first release * fix shasum * change build num * change build num * fix some problematic points which were reviewed * fix some problemaptic points * update MutMap * to solve conflict * update MutMap 2.0.6 * to solve conflict * to solve conflict * change build num * change build num again * update MutMap * update MutMap to v2.0.8 * update mutmap * update MutMap * openssl >=1.0 removed from dependencies
* This is first commit to bioconda * this is first release * fix shasum * change build num * change build num * fix some problematic points which were reviewed * fix some problemaptic points * update MutMap * to solve conflict * update MutMap 2.0.6 * to solve conflict * to solve conflict * change build num * change build num again * update MutMap * add QTL-seq v2.0.0 * update MutMap to v2.0.8 * update QTL-seq * update QTL-seq * update mutmap * update qtlseq * update qtlseq * update MutMap * update QTL-seq * update QTL-seq * openssl >=1.0 removed from dependencies
* Added version 1.6.0 * Added licence file * Fixed linting problems * Removed 1.3.8 version * Added runtime dependencies
* Update dependencies. * Solve linting problems. * Fix yaml file. * Fix yaml file. * Remove space. * Python version for run. * Undo that last change. * Improving recipe dependencies.
Package uploads complete: [ci skip] - biocontainers/thapbi-pict:0.2.3--py_0 - noarch/thapbi-pict-0.2.3-py_0.tar.bz2
Package uploads complete: [ci skip] - biocontainers/bx-python:0.8.4--py27hebb334c_0 - biocontainers/bx-python:0.8.4--py36hebb334c_0 - biocontainers/bx-python:0.8.4--py37hebb334c_0 - linux-64/bx-python-0.8.4-py27hebb334c_0.tar.bz2 - linux-64/bx-python-0.8.4-py36hebb334c_0.tar.bz2 - linux-64/bx-python-0.8.4-py37hebb334c_0.tar.bz2 - osx-64/bx-python-0.8.4-py27h418f4c1_0.tar.bz2 - osx-64/bx-python-0.8.4-py36h418f4c1_0.tar.bz2 - osx-64/bx-python-0.8.4-py37h418f4c1_0.tar.bz2
* Removing export that pollutes conda env PATH * Incremented build nr
* Update r-brio to 0.2.2 * Update meta.yaml
* Update perl-libwww-perl to 6.39 * Update meta.yaml
* Update perl-image-exiftool to 11.50 * Update meta.yaml
* Update perl-sql-statement to 1.412 * Update meta.yaml
Package uploads complete: [ci skip] - biocontainers/perl-json-pp:4.03--pl526_0 - noarch/perl-json-pp-4.03-pl526_0.tar.bz2 Co-authored-by: Andreas Sjödin <[email protected]>
Package uploads complete: [ci skip] - biocontainers/varfish-annotator-cli:0.7--0 - noarch/varfish-annotator-cli-0.7-0.tar.bz2
Package uploads complete: [ci skip] - biocontainers/ucsc-cell-browser:0.5.37--py_0 - noarch/ucsc-cell-browser-0.5.37-py_0.tar.bz2
Package uploads complete: [ci skip] - biocontainers/perl-excel-writer-xlsx:1.00--pl526_0 - noarch/perl-excel-writer-xlsx-1.00-pl526_0.tar.bz2 Co-authored-by: Andreas Sjödin <[email protected]>
Package uploads complete: [ci skip] - biocontainers/nanofilt:2.5.0--py_0 - noarch/nanofilt-2.5.0-py_0.tar.bz2 Co-authored-by: Andreas Sjödin <[email protected]>
Package uploads complete: [ci skip] - biocontainers/varfish-annotator-cli:0.7--0 - noarch/varfish-annotator-cli-0.7-0.tar.bz2
Package uploads complete: [ci skip] - biocontainers/nanoplotter:1.10.0--py_0 - noarch/nanoplotter-1.10.0-py_0.tar.bz2
Package uploads complete: [ci skip] - biocontainers/plantcv:3.4.1--py_0 - noarch/plantcv-3.4.1-py_0.tar.bz2
Package uploads complete: [ci skip] - biocontainers/snippy:4.4.0--1 - noarch/snippy-4.4.0-1.tar.bz2 Co-authored-by: Devon Ryan <[email protected]>
Package uploads complete: [ci skip] - biocontainers/scelvis:0.3.0--py_0 - noarch/scelvis-0.3.0-py_0.tar.bz2
Package uploads complete: [ci skip] - biocontainers/mirtop:0.4.19--py_0 - noarch/mirtop-0.4.19-py_0.tar.bz2 Co-authored-by: Elmar Pruesse <[email protected]>
Package uploads complete: [ci skip] - biocontainers/ncbi-amrfinderplus:3.0.8--h992ad13_0 - linux-64/ncbi-amrfinderplus-3.0.8-h992ad13_0.tar.bz2 - osx-64/ncbi-amrfinderplus-3.0.8-h6e978cd_0.tar.bz2
Package uploads complete: [ci skip] - biocontainers/pgcgap:1.0.4--0 - noarch/pgcgap-1.0.4-0.tar.bz2
pravs3683
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Jan 13, 2020
Merge PR bioconda#19567, commits were: * modified recipe based on bioconda recommendation * modified recipe based on bioconda recommendation * recipe for module math-matrix * Merge pull request #2 from bioconda/master Updating repo to origin * Merge pull request #1 from bioconda/master updated from bioconda in fork
pravs3683
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Jan 13, 2020
Merge PR bioconda#19568, commits were: * added perl-test-most module * modified to run Makefile.PL * modified recipe based on bioconda recommendation * modified recipe based on bioconda recommendation * recipe for module math-matrixreal * Merge pull request #2 from bioconda/master Updating repo to origin * Merge pull request #1 from bioconda/master updated from bioconda in fork
pravs3683
added a commit
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Jan 15, 2020
Merge PR bioconda#19710, commits were: * modified perl env path using sed command * adding perl to exec command * fixed typo in test section * adding exec command in the wrapper script * tried fixing perl env path * Modified test section * Update meta.yaml * Update build.sh * Update meta.yaml * Update build.sh * Update build.sh * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update build.sh * Merge branch 'master' into quantwiz-iq * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * cleaned build.sh script * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * cleaned build.sh script * New tool for Reporter based Isobaric Quantitation using iTRAQ and TMT tags from shotgun proteomics experiments * Merge pull request #2 from bioconda/master Updating repo to origin * Merge pull request #1 from bioconda/master updated from bioconda in fork
pravs3683
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Jan 16, 2020
Merge PR bioconda#19753, commits were: * Update meta.yaml * Update build.sh for QuantWiz_IQ Adding escape "\" character to fix short wrapper part in the recipe * Merge pull request #4 from bioconda/master Sync * Merge pull request #3 from bioconda/master merge * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #2 from bioconda/master Updating repo to origin * Merge pull request #1 from bioconda/master updated from bioconda in fork
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