Snippy 4.4.0

[greenkidneybean]

Hi @bioconda/core, this is a pull request to update the recipe for snippy in response to this issue, though I'm not sure the inclusion of java-jdk =8.0.112 in the meta.yaml is a working fix. I ran tests on branch snippy_4.4.0 via CircleCI and they appear to be passing. I've since turned off CircleCI builds on my fork.

For future reference, how would I go about testing the .tar.bz2 generated by conda-build?

• I have read the guidelines for bioconda recipes.
• This PR adds a new recipe.
• AFAIK, this recipe is directly relevant to the biological sciences (otherwise, please submit to the more general purpose conda-forge channel).
• This PR updates an existing recipe.
• This PR does something else (explain below).

[biocondabot]

Welcome to Bioconda, @greenkidneybean! Thank you for opening your first pull request! As you're new to Bioconda, please read through our documentation about contributing recipes. If you need help, please ping one of the following teams:

• @bioconda/haskel for Haskell packages
• @bioconda/lib for C/C++ packages
• @bioconda/osx for help with builds erroring on OSX
• @bioconda/perl for perl packages
• @bioconda/python for python packages
• @bioconda/r for R packages
• @bioconda/rust for Rust packages
• @bioconda/core in other cases

You can also join our Gitter channel to find help.

Please ping @bioconda/core when your pull request is passing tests and ready to be merged.

If you would like to join Bioconda, please mention that to @bioconda/core and they will happily send out an invitation link to you!

[dpryan79]

Do you have circleci enabled on your fork? If so, I think that's preventing it from working for the PR.

[biocondabot]

Package(s) built on CircleCI are ready for inspection:

Arch	Package	Repodata
noarch	snippy-4.4.0-1.tar.bz2	repodata.json

---

You may also use conda to install these:

• For packages in noarch:

  conda install -c https://62221-42372094-gh.circle-artifacts.com/0/tmp/artifacts/packages <package name>
  

---

Docker image(s) built:

Package	Tag	Install with docker
snippy	4.4.0--1	show curl "https://62221-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/snippy%3A4.4.0--1.tar.gz" | gzip -dc | docker load

[dpryan79]

Does this really require java-jdk rather than openjdk?

[greenkidneybean]

I currently do not have circleci enabled on my fork, though it was enabled with i initially created the PR. I'll try the recipe with openjdk, @tseemann recommended using java-jdk as a fix for the issue and it worked. I've never used either and am in the dark on the difference between the two

[dpryan79]

The most recent versions just pull in openjdk 8, so you might as well switch to using that directly.

[npavlovikj]

On a side note, the build number should be increased to 1.

[epruesse]

@BiocondaBot merge

[biocondabot]

Upload & Merge started. Reload page to view progress.

• Checks OK
• Fetching 1 packages and 1 images
• Uploaded image biocontainers/snippy:4.4.0--1
• Uploaded package noarch/snippy-4.4.0-1.tar.bz2
• Creating squash merge (with co-authors @dpryan79)

[biocondabot]

@epruesse, your request to merge succeeded: Pull Request successfully merged