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specifies openjdk for Java 8 #16175

Merged
merged 1 commit into from
Jul 3, 2019
Merged

specifies openjdk for Java 8 #16175

merged 1 commit into from
Jul 3, 2019

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greenkidneybean
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Hi @bioconda/core, this is a pull request to update the recipe for snippy in response to this issue and is a correction to PR #16003. This recipe specifies openjdk =8 in the meta.yaml, ensures that Java 8 is called for snpEff as recommended by @tseemann

  • I have read the guidelines for bioconda recipes.
  • This PR adds a new recipe.
  • AFAIK, this recipe is directly relevant to the biological sciences (otherwise, please submit to the more general purpose conda-forge channel).
  • This PR updates an existing recipe.
  • This PR does something else (explain below).

May the SNPs be with you.

specifies openjdk version to Java 8 for snpEff.  Build number bumped to "2"
@biocondabot
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biocondabot bot commented Jul 2, 2019

Package(s) built on CircleCI are ready for inspection:

Arch Package Repodata
noarch snippy-4.4.0-2.tar.bz2 repodata.json

You may also use conda to install these:

  • For packages in noarch:
    conda install -c https://63359-42372094-gh.circle-artifacts.com/0/tmp/artifacts/packages <package name>
    

Docker image(s) built:

Package Tag Install with docker
snippy 4.4.0--2
showcurl "https://63359-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/snippy%3A4.4.0--2.tar.gz" | gzip -dc | docker load

@npavlovikj
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@BiocondaBot recheck

@npavlovikj npavlovikj merged commit ecca5ca into bioconda:master Jul 3, 2019
@greenkidneybean greenkidneybean deleted the snippy_v4.4.0 branch July 3, 2019 13:51
kpalin pushed a commit to kpalin/bioconda-recipes that referenced this pull request Aug 7, 2019
specifies openjdk version to Java 8 for snpEff.  Build number bumped to "2"
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2 participants