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Sync #4

Merged
merged 20 commits into from
Jan 15, 2020
Merged

Sync #4

merged 20 commits into from
Jan 15, 2020

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pravs3683
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pravs3683 and others added 20 commits January 14, 2020 13:40
Merge PR #19710, commits were: 
 * modified perl env path using sed command
 * adding perl to exec command
 * fixed typo in test section
 * adding  exec command in the wrapper script
 * tried fixing perl env path
 * Modified test section
 * Update meta.yaml
 * Update build.sh
 * Update meta.yaml
 * Update build.sh
 * Update build.sh
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Update build.sh
 * Merge branch 'master' into quantwiz-iq
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * cleaned build.sh script
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * cleaned build.sh script
 * New tool for Reporter based Isobaric Quantitation using iTRAQ and TMT tags from shotgun proteomics experiments
 * Merge pull request #2 from bioconda/master

Updating repo to origin
 * Merge pull request #1 from bioconda/master

updated from bioconda in fork
* Update r-syntactic to 0.3.5

* Update r-syntactic dependencies

Co-authored-by: Michael Steinbaugh <[email protected]>
* Update r-transformer to 0.2.12

* Update meta.yaml

Co-authored-by: Michael Steinbaugh <[email protected]>
Merge PR #19733, commits were: 
 * Update deeplift to 0.6.9.3
Merge PR #19730, commits were: 
 * update KMC kmer counter to bug-fix release 3.1.2rc1
Merge PR #19734, commits were: 
 * mummer4: added a patch that fixes promer
* bump to novoalign 3.09.04
Merge PR #19735, commits were: 
 * Simplyfied build script
 * Updated biobasehttptools to version 1.1.0
Merge PR #19728, commits were: 
 * dsh-bio 1.3.1
Merge PR #19736, commits were: 
 * cmsip/meta.yaml: fix run time dependency
Merge PR #19731, commits were: 
 * Update libis to 0.0.11
Merge PR #19727, commits were: 
 * bump build number and fix linting errors
 * shasum versatility in post-script
Merge PR #19723, commits were: 
 * Merge branch 'master' into discosnp-v2.4.3
 * incrementing build number
 * removes unwanted script in bin
 * fixes recipe error for discosnprad
 * recipe for discosnp v2.4.3 compatible with discosnprad
Merge PR #19741, commits were: 
 * bumping v3
 * adding novoalign v4
Merge PR #19739, commits were: 
 * update stream to 0.4.1
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * update STREAM to 0.4.0
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * rebuild stream_atac 0.3.5
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * rebuild stream_atac 0.3.5
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * update rebuild number
 * specify libgfortran version
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * specify libgfortran version
 * Merge branch 'master' of https://github.com/huidongchen/bioconda-recipes
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Update build.sh
 * specify libgfortran version
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * rebuild stream_atac 0.3.5
* Update r-brio to 0.3.17

* Update meta.yaml

* Resort the dependencies

Co-authored-by: Devon Ryan <[email protected]>
Co-authored-by: Michael Steinbaugh <[email protected]>
Merge PR #19745, commits were: 
 * add sraX
 * add sraX
 * add sraX
 * add sraX
 * add sraX
 * add sraX
Merge PR #19743, commits were: 
 * Add macrel at v0.2
@pravs3683 pravs3683 merged commit cc5a722 into pravs3683:master Jan 15, 2020
pravs3683 added a commit that referenced this pull request Jan 16, 2020
Merge PR bioconda#19753, commits were: 
 * Update meta.yaml
 * Update build.sh for QuantWiz_IQ

Adding escape "\" character to fix short wrapper part in the recipe
 * Merge pull request #4 from bioconda/master

Sync
 * Merge pull request #3 from bioconda/master

merge
 * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
 * Merge pull request #2 from bioconda/master

Updating repo to origin
 * Merge pull request #1 from bioconda/master

updated from bioconda in fork
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