Updating repo to origin #2
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Merge PR #19245, commits were: * Update mashtree to 1.0.4
Merge PR #19248, commits were: * Update macs2 to 2.2.6
Merge PR #19253, commits were: * fourth test to see if htslib path is now found * testing if 'run' solves the mac compile error * second attempt based on first failure * first attempt to add falco to bioconda
Merge PR #19249, commits were: * add assemblytics
Merge PR #19243, commits were: * update sha256 * update tbprofiler
Merge PR #19240, commits were: * Update nanopolish to 0.11.3
Merge PR #19252, commits were: * Update post-link message. * Update post-link message. * Update post-link message. * Update build requirement, required libraries, and manuscript DOI.
Merge PR #19238, commits were: * Update ucsc-cell-browser to 0.7.4
Merge PR #19234, commits were: * Update covtobed to 0.3
Merge PR #19237, commits were: * Update meta.yaml * Add setuptools_scm in recipe. * Add python version number. * noarch added. * Recipe to build scvelo python package.
Merge PR #19235, commits were: * Update svdb to 2.2.0
Merge PR #19137, commits were: * Update run_test.sh * include minimum test data, even if not recommended * forgot to export the new paths of the tools * remove maleblastDB has to be done in the RepeatMasker recipe * sed has to be done after creation * fix path to different RepeatModeler tools, add RepeatPeps.lib.psq if absent * increment build * fix bug mixing up DIR and PRGM paths
Merge PR #19262, commits were: * add gitter token * Maintain pysam 0.15.2 for medaka
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Merge PR #19282, commits were: * Updated hmmer version dependency for compatability with Qiime2
Merge PR #19281, commits were: * Update ucsc-cell-browser to 0.7.5
Merge PR #19283, commits were: * Update galaxy-ml to 0.8.1
Merge PR #19280, commits were: * Update binsanity to 0.3.1
Merge PR #19275, commits were: * copying headers to include
* Update flashlfq to 1.0.3 * Update flashlfq to 1.0.3
* first attempt to add falco to bioconda * second attempt based on first failure * testing if 'run' solves the mac compile error * fourth test to see if htslib path is now found * I changed the release because conda install was not working * bumping build number * fixing shebang location
Merge PR #19538, commits were: * Incremented build nr * Updated pinned dependencies for version 1.8.0
Merge PR #19537, commits were: * Update croo to 0.3.4
Merge PR #19505, commits were: * Update meta.yaml * moabs/meta.yaml: add host and run dependencies
Merge PR #19529, commits were: * Add famsa
Merge PR #19371, commits were: * merged + fixed typo for pyyaml * added pyyaml (was previously handled by snakemake) * temporarily incactivated snakemake dependency Creates conflicts with python, which I don't understand since in principle current default python version is 3.8. conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {"python[version='>=2.7,<2.8.0a0']", "python[version='>=3.5.3']"} * temporarily inactivated build dependency to python because of version conflicts with snakemake dependency * Update meta.yaml * added some tests * reactivated the compilation of the R package TFBMclust * added r-base and python in the build dependencies * temporarily commented R compilation because generates error (R: command not found) * fixed sha256 * changed version + added some tests * fixed problems with the compilation of C code (was ignored because not in the right directory) + added compilation of the R package TFBMclust * commented failing tests * Update meta.yaml * fixed indentation * added some tests - tests for the compiled C programs - run random-motif (python program) - run info-gibbs (compiled C) as sub-command of the rsat command * uncommented C programs to be compiled - count-words - matrix-scan-quick - retrieve-variation-seq - variation-scan * changed version to 2019.12.20 * fixed path for share/rsat/rsat.yaml; added R-files * fixed the path $PREFIX/bin/rsat * fix sha256 * fixed inconsistency with sha256 * added a shebang + suppressed obsolete line + commented most C programs to test a single compilation * added DOI and bio.tools ID * cleaned obsolete comments in the build file * typo + added tests * Added LICENSE file * shorter summary * some lint fixes * added rsat-core
Merge PR #19515, commits were: * update build script * Update regtools to 0.5.2
Merge PR #19522, commits were: * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update build.sh * mv meta, build to smashpp dir * smashpp * smashpp
Merge PR #19540, commits were: * Update metabat2 to 2.15
Merge PR #19539, commits were: * Update arriba to 1.2.0 * inject compiler * Update arriba to 1.2.0
Merge PR #19541, commits were: * try to cache rust builds * Update sourmash to 3.0.1
Merge PR #19543, commits were: * Update desalt to 1.5.2
Merge PR #19546, commits were: * Update meta.yaml * Update meta.yaml * Update meta.yaml * New: cameo v0.11.15 -- metabolic engineering strain design
Merge PR #19545, commits were: * Update nanoplot to 1.28.2
Merge PR #19544, commits were: * Update genometools-genometools to 1.6.0
Merge PR #19547, commits were: * Update rnachipintegrator to 2.0.0
Merge PR #19550, commits were: * rnachipintegrator: fix 'noarch' for pure Python package. * rnachipintegrator: fix incorrect SHA256 checksum. * rnachipintegrator: update for version 2.0.0.
Merge PR #19556, commits were: * Update gsalign to 1.0.12
Merge PR #19551, commits were: * luciphor2: replace - in version by _ * luciphor2: initial commit based on the opsin 2.4.0 recipe
Merge PR #19558, commits were: * Update galaxy-ml to 0.8.2
Merge PR #19563, commits were: * Update simlord to 1.0.4
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Jan 13, 2020
Merge PR bioconda#19567, commits were: * modified recipe based on bioconda recommendation * modified recipe based on bioconda recommendation * recipe for module math-matrix * Merge pull request #2 from bioconda/master Updating repo to origin * Merge pull request #1 from bioconda/master updated from bioconda in fork
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Jan 13, 2020
Merge PR bioconda#19568, commits were: * added perl-test-most module * modified to run Makefile.PL * modified recipe based on bioconda recommendation * modified recipe based on bioconda recommendation * recipe for module math-matrixreal * Merge pull request #2 from bioconda/master Updating repo to origin * Merge pull request #1 from bioconda/master updated from bioconda in fork
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Jan 15, 2020
Merge PR bioconda#19710, commits were: * modified perl env path using sed command * adding perl to exec command * fixed typo in test section * adding exec command in the wrapper script * tried fixing perl env path * Modified test section * Update meta.yaml * Update build.sh * Update meta.yaml * Update build.sh * Update build.sh * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update build.sh * Merge branch 'master' into quantwiz-iq * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * cleaned build.sh script * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * cleaned build.sh script * New tool for Reporter based Isobaric Quantitation using iTRAQ and TMT tags from shotgun proteomics experiments * Merge pull request #2 from bioconda/master Updating repo to origin * Merge pull request #1 from bioconda/master updated from bioconda in fork
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Jan 16, 2020
Merge PR bioconda#19753, commits were: * Update meta.yaml * Update build.sh for QuantWiz_IQ Adding escape "\" character to fix short wrapper part in the recipe * Merge pull request #4 from bioconda/master Sync * Merge pull request #3 from bioconda/master merge * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #2 from bioconda/master Updating repo to origin * Merge pull request #1 from bioconda/master updated from bioconda in fork
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