Files
ViNERS generates intermediate and final output data-files, which are organised in a SPARC dataset structure. ViNERS uses tools.file to manage subject-, sample-, and run-specific file-paths transparently.
All model outputs are saved as MATLAB v7 .mat datafiles. The internals of these files will vary depending on the particular model stage in question:
-
models.axon_population:
sub~/axons/axons (name).mat -
models.nerve_anatomy:
sub~/eidors/sensitivity (name).mat andsub~/eidors/stimulus (name).mat -
models.membrane_currents:
sub~/axons/[name]/[type]/index.mat -
models.axon_sfap:
sub~/sfap/sensitivity (name).mat -
models.axon_thresholds:
sub~/thresholds/[name]/type-fascicle0.mat -
models.nerve_stimulation:
sub~/stim/[name]/type-fascicle0.mat -
models.nerve_recording:
sub~/waves/[activity (name)]/epoch_(...).mat -
models.ECAP_recording:
sub~/waves/stimulus (name)/stim_(...).mat
See +models for more about the individual model steps.
Shows an example data organisation and the code which generates each data file or folder