Update giatools to 0.3.1

[BiocondaBot]

Update giatools: 0.3 → 0.3.1

Info	Link or Description
Recipe	recipes/giatools (click to view/edit other files)
Summary	Tools required for Galaxy Image Analysis
Home	https://github.com/BMCV/giatools
Releases	https://github.com/BMCV/giatools/tags
Recipe Maintainer(s)	@kostrykin
Author	@BMCV

---

This pull request was automatically generated (see docs).

[coderabbitai]

📝 Walkthrough

Walkthrough

The pull request updates the giatools package by incrementing its version from "0.3" to "0.3.1". This includes modifying the source URL to reflect the new version's zip file and updating the SHA-256 checksum accordingly to ensure integrity verification for the new release.

Changes

Files	Change Summary
recipes/giatools/meta.yaml	- Version updated from "0.3" to "0.3.1" - Source URL changed to point to "0.3.1.zip" - SHA256 checksum updated from 2172581b7c2a428184082ccf715cfac2c61ea19d37651784ae5283402a1ef6f1 to 3c763086a656514219a9b81fbfe2c4ac1c58a91c58345d18ebd028c44e2eb080

Possibly related PRs

• Update architeuthis to 0.3.1 #50970: The architeuthis package update also involves changing the version number and SHA256 checksum in the meta.yaml file, similar to the changes made in the main PR for giatools.
• Update giatools to 0.3 #51004: This PR updates the giatools package to version 0.3, which is directly related to the main PR that updates giatools to version 0.3.1, indicating a close connection in terms of the same package and similar changes in versioning and checksums.

---

📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between c681322 and 1a36293.

📒 Files selected for processing (1)

• recipes/giatools/meta.yaml (1 hunks)

🔇 Additional comments (4)

recipes/giatools/meta.yaml (4)

2-2: Version update looks good.

The version bump from 0.3 to 0.3.1 is consistent with the PR objectives and follows semantic versioning for a patch update.

---

10-10: Verify the updated SHA256 checksum.

The SHA256 checksum has been updated, which is expected for a new version. However, it's crucial to verify that this checksum is correct for the new package version.

To verify the SHA256 checksum, you can run the following commands:

#!/bin/bash
# Download the package and calculate its SHA256 checksum
curl -L https://github.com/BMCV/giatools/archive/refs/tags/0.3.1.zip -o giatools-0.3.1.zip
echo "3c763086a656514219a9b81fbfe2c4ac1c58a91c58345d18ebd028c44e2eb080 giatools-0.3.1.zip" | sha256sum -c -

This script will download the package and verify if the provided checksum matches the downloaded file.

---

Line range hint 1-45: Suggest checking the changelog for potential dependency updates.

The update from 0.3 to 0.3.1 appears to be a patch version, and no changes were made to the dependencies. However, it's good practice to verify if any dependency updates are required for this new version.

Please check the changelog or release notes for version 0.3.1 to ensure no dependency updates are needed. You can use the following command to fetch the latest releases:

#!/bin/bash
# Fetch the latest releases and their details
gh release list -R BMCV/giatools -L 2

This will show the details of the latest two releases, which should include any relevant information about dependency changes or other important updates.

🧰 Tools

🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

---

9-9: Source URL update is correct.

The source URL has been properly updated to reflect the new version number, maintaining the correct structure for GitHub release tags.

To ensure the URL is valid and the file is accessible, you can run the following command:

This command will perform a HEAD request to check if the file exists and is accessible.

✅ Verification successful

Source URL accessibility verified.

The updated source URL successfully redirects and the file giatools-0.3.1.zip is accessible for download.

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Verify the source URL is accessible
curl -I https://github.com/BMCV/giatools/archive/refs/tags/0.3.1.zip

Length of output: 409

---

Script:

#!/bin/bash
# Verify the source URL is accessible by performing a HEAD request
curl -I https://github.com/BMCV/giatools/archive/refs/tags/0.3.1.zip

Length of output: 4261

---

Script:

#!/bin/bash
# Verify the source URL is accessible by following redirects and checking the final HTTP status code
curl -IL https://github.com/BMCV/giatools/archive/refs/tags/0.3.1.zip

Length of output: 4989

---

Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?

❤️ Share

• X
• Mastodon
• Reddit
• LinkedIn

🪧 Tips

Chat

There are 3 ways to chat with CodeRabbit:

• Review comments: Directly reply to a review comment made by CodeRabbit. Example:
  • I pushed a fix in commit <commit_id>, please review it.
  • Generate unit testing code for this file.
  • Open a follow-up GitHub issue for this discussion.
• Files and specific lines of code (under the "Files changed" tab): Tag @coderabbitai in a new review comment at the desired location with your query. Examples:
  • @coderabbitai generate unit testing code for this file.
  • @coderabbitai modularize this function.
• PR comments: Tag @coderabbitai in a new PR comment to ask questions about the PR branch. For the best results, please provide a very specific query, as very limited context is provided in this mode. Examples:
  • @coderabbitai gather interesting stats about this repository and render them as a table. Additionally, render a pie chart showing the language distribution in the codebase.
  • @coderabbitai read src/utils.ts and generate unit testing code.
  • @coderabbitai read the files in the src/scheduler package and generate a class diagram using mermaid and a README in the markdown format.
  • @coderabbitai help me debug CodeRabbit configuration file.

Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments.

CodeRabbit Commands (Invoked using PR comments)

• @coderabbitai pause to pause the reviews on a PR.
• @coderabbitai resume to resume the paused reviews.
• @coderabbitai review to trigger an incremental review. This is useful when automatic reviews are disabled for the repository.
• @coderabbitai full review to do a full review from scratch and review all the files again.
• @coderabbitai summary to regenerate the summary of the PR.
• @coderabbitai resolve resolve all the CodeRabbit review comments.
• @coderabbitai configuration to show the current CodeRabbit configuration for the repository.
• @coderabbitai help to get help.

Other keywords and placeholders

• Add @coderabbitai ignore anywhere in the PR description to prevent this PR from being reviewed.
• Add @coderabbitai summary to generate the high-level summary at a specific location in the PR description.
• Add @coderabbitai anywhere in the PR title to generate the title automatically.

CodeRabbit Configuration File (.coderabbit.yaml)

• You can programmatically configure CodeRabbit by adding a .coderabbit.yaml file to the root of your repository.
• Please see the configuration documentation for more information.
• If your editor has YAML language server enabled, you can add the path at the top of this file to enable auto-completion and validation: # yaml-language-server: $schema=https://coderabbit.ai/integrations/schema.v2.json

Documentation and Community

• Visit our Documentation for detailed information on how to use CodeRabbit.
• Join our Discord Community to get help, request features, and share feedback.
• Follow us on X/Twitter for updates and announcements.