Update snakeobjects to 3.1.4 #51019
Update snakeobjects to 3.1.4 #51019
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📝 Walkthrough📝 WalkthroughWalkthroughThe pull request updates the Changes
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Actionable comments posted: 1
📜 Review details
Configuration used: CodeRabbit UI
Review profile: CHILL
📒 Files selected for processing (1)
- recipes/snakeobjects/meta.yaml (2 hunks)
🧰 Additional context used
🪛 yamllint
recipes/snakeobjects/meta.yaml
[error] 1-1: syntax error: found character '%' that cannot start any token
(syntax)
🔇 Additional comments (6)
recipes/snakeobjects/meta.yaml (6)
1-1: Version update looks good.The version has been correctly updated from 3.1.2 to 3.1.4, which is consistent with the PR objectives.
🧰 Tools
🪛 yamllint
[error] 1-1: syntax error: found character '%' that cannot start any token
(syntax)
39-39: License family added.The
license_family: MITentry has been added, which is consistent with the existinglicense: MIT. This provides more specific licensing information and is a good practice for Conda recipes.
41-41: Development URL added.The
dev_urlentry has been added, pointing to the GitHub repository of the project. This is a valuable addition as it provides easy access to the source code and development resources for users and potential contributors.
1-1: Note on yamllint warning (false positive).The static analysis tool (yamllint) reported a syntax error for the '%' character at the beginning of the file. This is a false positive. The '%' character is part of the Jinja2 template syntax commonly used in Conda recipes. The syntax is correct and should not be changed.
🧰 Tools
🪛 yamllint
[error] 1-1: syntax error: found character '%' that cannot start any token
(syntax)
12-12: Build script has been updated with new flags.The build script has been modified with the following changes:
- Added
--no-build-isolationflag: This prevents pip from creating a virtual environment for building, which can speed up the build process but may lead to inconsistencies if the build environment is not properly controlled.- Added
--no-cache-dirflag: This disables the pip cache, ensuring a fresh build every time but potentially increasing build time.- Increased verbosity from
-vvto-vvv: This will provide more detailed output during the build process, which can be helpful for debugging but may produce more log output.These changes may impact the build process and debugging. Please ensure that these modifications align with the intended build behavior for this package.
To verify the impact of these changes, we can check if similar flags are used in other recipes:
#!/bin/bash # Description: Check for similar build flags in other recipes # Test: Look for recipes using similar build flags rg --type yaml 'script:.*pip install.*--no-build-isolation.*--no-cache-dir.*-vvv' recipes/ # Expected output: A list of recipes using similar build flags # If no output is produced, it means these flags are unique to this recipe
17-18: Newrun_exportssection added.A
run_exportssection has been added to the recipe:run_exports: - {{ pin_subpackage('snakeobjects', max_pin="x") }}This addition ensures that when
snakeobjectsis used as a dependency in other packages, it will be pinned to the major version (x..). This is a good practice for maintaining compatibility between packages while allowing for minor and patch updates.However, we should verify if this pinning strategy is appropriate for
snakeobjects. Are there any known compatibility issues between minor versions that would require a stricter pinning?Let's check if other similar packages use the same pinning strategy:
#!/bin/bash # Description: Check for similar run_exports configurations in other recipes # Test: Look for recipes using similar run_exports configurations rg --type yaml 'run_exports:.*pin_subpackage.*max_pin="x"' recipes/ # Expected output: A list of recipes using similar run_exports configurations # If no output is produced, it means this configuration is unique to this recipe
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| package: | ||
| name: snakeobjects | ||
| version: {{ version }} | ||
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| source: | ||
| url: https://github.com/iossifovlab/snakeobjects/archive/refs/tags/{{ version }}.tar.gz | ||
| sha256: b95951c084c5d4ab047bb4dccbb2d7c1573bf9652eabde29b5c6fab93c1075e4 | ||
| sha256: 056d8edff46015a6813047f327ca1888c88ee012707e9400d6297e4eb7b00cf7 |
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💡 Codebase verification
Source URL has not been updated correctly.
Please ensure that the url in recipes/snakeobjects/meta.yaml includes the updated version 3.1.4.tar.gz.
- File:
recipes/snakeobjects/meta.yaml - Line: 9
🔗 Analysis chain
SHA256 checksum update looks good.
The SHA256 checksum has been updated, which is necessary when changing the source version.
Let's verify if the source URL has been updated correctly:
🏁 Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash
# Description: Verify that the source URL has been updated to match the new version.
# Test: Check if the URL in the YAML file matches the expected pattern
grep -n 'url:.*3.1.4.tar.gz' recipes/snakeobjects/meta.yaml
# Expected output: A line containing the URL with the new version (3.1.4)
# If no output is produced, it means the URL hasn't been updated correctly
Length of output: 952
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Actionable comments posted: 0
🧹 Outside diff range and nitpick comments (1)
recipes/snakeobjects/meta.yaml (1)
19-19: Remove trailing spaces.There are trailing spaces on this line. Please remove them to improve code cleanliness.
Apply this diff to remove the trailing spaces:
- +🧰 Tools
🪛 yamllint
[error] 19-19: trailing spaces
(trailing-spaces)
📜 Review details
Configuration used: CodeRabbit UI
Review profile: CHILL
📒 Files selected for processing (1)
- recipes/snakeobjects/meta.yaml (2 hunks)
🧰 Additional context used
🪛 yamllint
recipes/snakeobjects/meta.yaml
[error] 19-19: trailing spaces
(trailing-spaces)
[error] 1-1: syntax error: found character '%' that cannot start any token
(syntax)
🔇 Additional comments (6)
recipes/snakeobjects/meta.yaml (6)
1-1: Version update looks good.The package version has been correctly updated to 3.1.4, which is consistent with the PR objectives.
🧰 Tools
🪛 yamllint
[error] 1-1: syntax error: found character '%' that cannot start any token
(syntax)
8-9: Source update is correct.The SHA256 checksum has been updated to match the new version. The source URL on line 8 uses a Jinja2 template to include the version, so it's automatically updated when the version changes.
Note: The previous review comment about the source URL not being updated correctly is no longer valid.
39-39: About section updated with additional metadata.The
aboutsection has been expanded to include:
license_family: MITdev_url: https://github.com/iossifovlab/snakeobjectsThese additions provide more comprehensive metadata about the package.
Also applies to: 41-41
22-22: Python version requirement updated.The Python version requirement has been updated to
<3.12for both host and run environments. This restriction may be due to compatibility issues with Python 3.12.Please verify the reason for this Python version restriction. You can run the following script to check if this restriction is common in other recipes and if there's any documentation about it:
#!/bin/bash # Description: Check Python version restrictions in other recipes and look for documentation # Test: Count recipes with Python <3.12 restriction echo "Recipes with Python <3.12 restriction:" rg --type yaml 'python\s*<3\.12' recipes | wc -l # Test: Look for documentation about Python version restrictions echo "Possible documentation about Python version restrictions:" rg --type md 'python.*version.*restrict' .github docsAlso applies to: 25-25
17-18: New run_exports entry added.A new
run_exportsentry has been added to pin thesnakeobjectssubpackage. This change may affect downstream dependencies.Please verify that this addition is necessary and doesn't cause any conflicts with existing dependencies. You can run the following script to check if similar run_exports are used in other recipes:
12-12: Build script updated with new flags.The build script has been updated to include
--no-build-isolationand--no-cache-dirflags, and the verbosity level has been increased to-vvv. These changes may affect the build process and debugging.Please verify that these new flags are necessary and don't cause any issues during the build process. You can run the following script to check if these flags are commonly used in other recipes:
✅ Verification successful
Build script update verified.
The new flags
--no-build-isolationand--no-cache-dir, along with the increased verbosity level-vvv, are widely used across the codebase:
--no-build-isolation: 492 occurrences--no-cache-dir: 288 occurrences-vvv: 574 occurrencesThis consistent usage indicates that the changes are standard and unlikely to cause issues during the build process.
🏁 Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Check usage of new build flags in other recipes # Test: Count occurrences of new flags in other recipe files echo "Recipes using --no-build-isolation:" rg --type yaml '{{ PYTHON }} -m pip install.*--no-build-isolation' recipes | wc -l echo "Recipes using --no-cache-dir:" rg --type yaml '{{ PYTHON }} -m pip install.*--no-cache-dir' recipes | wc -l echo "Recipes using -vvv:" rg --type yaml '{{ PYTHON }} -m pip install.*-vvv' recipes | wc -lLength of output: 461
Script:
#!/bin/bash # Description: Check usage of new build flags in other recipes # Test: Count occurrences of new flags in other recipe files echo "Recipes using --no-build-isolation:" rg --type yaml '{{ PYTHON }} -m pip install.*--no-build-isolation' recipes | wc -l echo "Recipes using --no-cache-dir:" rg --type yaml '{{ PYTHON }} -m pip install.*--no-cache-dir' recipes | wc -l echo "Recipes using -vvv:" rg --type yaml '{{ PYTHON }} -m pip install.*-vvv' recipes | wc -lLength of output: 790
Script:
#!/bin/bash # Description: Check usage of new build flags in other recipes # Test: Count occurrences of new flags in other recipe files echo "Recipes using --no-build-isolation:" rg --type yaml '\{\{ PYTHON \}\} -m pip install.*--no-build-isolation' recipes | wc -l echo "Recipes using --no-cache-dir:" rg --type yaml '\{\{ PYTHON \}\} -m pip install.*--no-cache-dir' recipes | wc -l echo "Recipes using -vvv:" rg --type yaml '\{\{ PYTHON \}\} -m pip install.*-vvv' recipes | wc -lLength of output: 455
Update
snakeobjects: 3.1.2 → 3.1.4recipes/snakeobjects(click to view/edit other files)@iossifovlabThis pull request was automatically generated (see docs).