Update GW to v1.1.1 #51426
Update GW to v1.1.1 #51426
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📝 Walkthrough📝 WalkthroughWalkthroughThe pull request introduces updates to the The Possibly related PRs
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🧹 Outside diff range and nitpick comments (1)
recipes/gw/meta.yaml (1)
75-77: Consider optimizing test commandsThe added test commands are useful for basic verification, but they could be improved:
- The
ls -lhcommand alone doesn't provide much context about the package installation.- The
which gwandls -lh $(which gw)commands could be combined for efficiency.Consider the following suggestions:
- - ls -lh - - which gw - - ls -lh $(which gw) + - command -v gw >/dev/null 2>&1 || { echo >&2 "gw not found in PATH"; exit 1; } + - ls -lh $(command -v gw) + - gw --versionThese changes will:
- Check if
gwis in the PATH and exit with an error if it's not.- Show details of the
gwexecutable if found.- Display the version of
gw, which is a common practice for verifying correct installation.
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recipes/gw/meta.yaml
[error] 1-1: syntax error: found character '%' that cannot start any token
(syntax)
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recipes/gw/meta.yaml (1)
1-2: LGTM: Version and checksum updated correctlyThe version has been correctly updated to 1.1.1, and the SHA256 checksum has been changed accordingly. These changes are consistent with the PR objective to update GW to v1.1.1.
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[error] 1-1: syntax error: found character '%' that cannot start any token
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🧹 Outside diff range and nitpick comments (1)
recipes/gw/meta.yaml (1)
75-79: Approve new test commands and suggest cleanup.The new test commands provide more comprehensive and efficient checks for the package installation. They verify the executable's presence, inspect its architecture, and check the version, which are all valuable for ensuring correct package deployment.
Consider removing the commented-out line 79 to keep the file clean:
- #- gw hg19 -b https://github.com/kcleal/gw/releases/download/v1.0.0/demo1.bam -r chr8:37047270-37055161 -n > test.png; ls -lh test.pngIf this test is no longer needed, it's better to remove it entirely rather than keeping it as a comment.
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🪛 yamllint
recipes/gw/meta.yaml
[error] 1-1: syntax error: found character '%' that cannot start any token
(syntax)
🔇 Additional comments (2)
recipes/gw/meta.yaml (2)
1-2: LGTM: Version and SHA256 updates are correct.The version has been correctly updated to 1.1.1, and the SHA256 checksum has been changed accordingly. These updates are consistent with the PR objective to update GW to v1.1.1.
🧰 Tools
🪛 yamllint
[error] 1-1: syntax error: found character '%' that cannot start any token
(syntax)
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1-79: Summary: Approve PR for updating GW to v1.1.1The changes in this PR successfully update the GW package to version 1.1.1. The key updates include:
- Version number and SHA256 checksum have been correctly updated.
- New test commands have been added to provide more comprehensive checks for the package installation.
These changes align with the PR objectives and improve the package validation process. The update appears to be correctly implemented and ready for merging.
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🧹 Outside diff range and nitpick comments (1)
recipes/gw/meta.yaml (1)
75-78: Improved test commands. Consider keeping the image generation test.The new test commands provide more comprehensive checks for the installation and functionality of the
gwpackage. These tests are more robust and less likely to fail due to environmental factors.Consider keeping the image generation test as an optional or extended test. It could be valuable for visual verification. You might want to add it back with a condition or as a separate test step:
- gw --version - if [[ "${CONDA_BUILD_CROSS_COMPILATION:-}" != "1" ]]; then gw hg19 -b https://github.com/kcleal/gw/releases/download/v1.0.0/demo1.bam -r chr8:37047270-37055161 -n > test.png && ls -lh test.png; fiThis way, the image generation test will only run when not cross-compiling, avoiding potential issues in certain build environments.
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🪛 yamllint
recipes/gw/meta.yaml
[error] 1-1: syntax error: found character '%' that cannot start any token
(syntax)
🔇 Additional comments (1)
recipes/gw/meta.yaml (1)
1-2: LGTM! Verify SHA256 checksum.The version update to 1.1.1 is consistent with the PR objective. The SHA256 checksum has been updated accordingly.
To ensure the integrity of the package, please verify the SHA256 checksum using the following script:
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[error] 1-1: syntax error: found character '%' that cannot start any token
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