TileDB-SOMA 1.10.0rc0
Pre-release
Pre-release
johnkerl
released this
17 Apr 13:53
·
11 commits
to release-1.10
since this release
New features added
- [python] Add back deprecated function
tiledbsoma_build_index
by @jp-dark in #2344 - [python/ci]
typeguard==4.2.1
, makerequirements_dev.txt
canonical by @ryan-williams in #2314 - [python]
tiledbsoma.io.from_h5ad
: document newadditional_metadata
param by @ryan-williams in #2360 - [python] Ingestion performance by @johnkerl in #2434
- [r] Add
obsm
,varm
,obsp
, andvarp
toSOMAExperimentAxisQuery
by @mojaveazure in #2351 - [r] Port blockwise iterator/reader to R by @mojaveazure in #2152
- [r] Add
$reopen()
toTileDBObject
by @mojaveazure in #2372
Minor changes
- Use core 2.22.0, TileDB-Py 0.28.0, TileDB-R 0.26.0 on
main
branch by @johnkerl in #2448 - [python/ci] Typofix from #2305 by @johnkerl in #2326
- [python/ci] Unbreak wheel builds,
main
by @johnkerl in #2341 - [python] Remove no-longer-necessary
_query_condition
import by @ryan-williams in #2286 - [c++/python] Add
soma_type
argument forSOMAObject::open
by @nguyenv in #2350 - [python] Skip writing empty
arrow_table
s by @ryan-williams in #2357 - [python]
isort
:tiledbsoma
beforetiledb
by @ryan-williams in #2381 - [c++,r,python] Move
nanoarrow
tosrc/external
by @eddelbuettel in #2383 - [python/ci] Run SO copying workflow on macos-13 to avoid SIP by @jdblischak in #2435
- [python] Code-review-feedback follow-up from #2434 by @johnkerl in #2441
- [r] Bump
DESCRIPTION
version formain
past 1.9 by @johnkerl in #2328 - [r] Additional
nanoarrow
refactor followup by @eddelbuettel in #2376 - [r] TileDB-SOMA R 1.10 (
release-1.10
branch) by @johnkerl in #2452 - [r/ci] Continue #2275 by @johnkerl in #2395
- [c++, r] Update and refactor nanoarrow by @eddelbuettel in #2188
- [c++] Set
nanoarrow.c
to useCMAKE_CXX_COMPILER
by @nguyenv in #2366 - [c++] Address final
valgrind
issue by @eddelbuettel in #2403 - [c++] Refactor
metadata
andcreate
to respect timestamps by @nguyenv in #2180 - Do not include nanoarrow files in clang-format by @nguyenv in #2449
Bug fixes
- [python] Expand coverage for registration of multi-region S3-backed H5ADs by @johnkerl in #2369
- [python] More
nan_append
checks: not-all-NaN, non-dupe IDs by @ryan-williams in #2364 - [python] Check for uniqueness of registration obs/var field-name inputs by @johnkerl in #2380
- [python] Enforce if-not-exists semantics for append/registration by @johnkerl in #2384
- [python] Pass more context in registrar by @johnkerl in #2411
- [python]
verify_core_versions()
duringimport tiledbsoma
by @ryan-williams in #2437 - [r] Check that TileDB Core library versions match by @eddelbuettel in #2410
- [r/ci] Unbreak wheel builds by @johnkerl in #2398
Full Changelog: 1.9.5...1.10.0rc0