1.6.0

New SCILPY release 1.6.0

First of all congrats to @EliseCos for her first PR 🎉 !!

A lot of new features and bug fixes. Thanks to @EmmaRenauld @CHrlS98 @karanphil @AlexVCaron @frheault !!

Good job everybody !

What's Changed

• [BF] Error message - metrics stats in ROI by @arnaudbore in #702
• [BF] GPU tracking kernel cannot be called main by @CHrlS98 in #701
• Get version script by @frheault in #703
• Adding import matplotlib to assign_custom_color_to_tractogram by @karanphil in #713
• Upgrade dipy to 1.7.0 by @CHrlS98 in #712
• Adding options for normalization in scil_assign_custom_color_to_tractogram by @karanphil in #717
• Adding absolute_peak_values to scil_compute_fodf_metrics.py by @karanphil in #715
• Fix: Add bundle to scores if it was not found by @EmmaRenauld in #709
• Refactor asym_odf_metrics script by @CHrlS98 in #708
• Add angle coloring option + fix bugs by @EmmaRenauld in #718
• Adding legacy options to scil_convert_sh_basis.py by @karanphil in #704
• [ENH] Add soft distance for each filter by @arnaudbore in #719
• Correlation ops by @frheault in #721
• (WIP) Harmonize json by @frheault in #716
• [ENH] Add new parameter to overwrite filter distance by @arnaudbore in #723
• Fix permissions by @frheault in #726
• Upgrade filter overwrite distance - Add criteria by @arnaudbore in #727
• RBx with FSS by @frheault in #707
• Multi centro labels map by @frheault in #728
• BUG: Allow tractogram math script to run as such by @jhlegarreta in #729
• Optional out_indices in scil_extract_dwi_shells.py by @CHrlS98 in #724
• Display masks as contours in screenshots by @AlexVCaron in #705
• ENH: Verbose tracking by @EmmaRenauld in #714
• Fix validate BIDS by @arnaudbore in #710
• Correct ihMTsat by @karanphil in #732
• Make stopping criteria more obvious + more similar to dipy. by @EmmaRenauld in #699
• Unit test tractogram operations by @EmmaRenauld in #706
• Sphere subdivide by @EliseCos in #731
• Working Scilpy development container for VS Code by @AlexVCaron in #733
• Fix filter anatomically by @arnaudbore in #735
• Fix bug with new .gitattributes by @AlexVCaron in #737
• Update citation for RBx -> BundleSeg by @frheault in #738
• Module streamline operations by @EmmaRenauld in #736
• Fix undetected bug after modifying module tractogram. by @EmmaRenauld in #739
• Add rejected streamlines to scil_filter_tractogram_anatomically by @arnaudbore in #740
• Remove pairwise by @frheault in #744
• Fix a few warnings by @EmmaRenauld in #748
• Use hot dipy 1.8.0.dev0 by @arnaudbore in #749
• Custom ROI surface rendering for Laurent by @frheault in #746
• Fix interp surf rendering by @frheault in #753
• Bump pillow from 9.0.1 to 10.0.1 in /docs by @dependabot in #755
• Bump pillow from 9.0.1 to 10.0.1 by @dependabot in #756
• ENH: scil_tractogram_math support for TCKs by @AntoineTheb in #752
• Merge gpu tracking into scil_compute_local_tracking.py by @CHrlS98 in #743
• Update version and README by @arnaudbore in #759

New Contributors

• @EliseCos made their first contribution in #731

Full Changelog: 1.5.0...1.6.0