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Refactor asym_odf_metrics script #708

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merged 5 commits into from
May 17, 2023
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@CHrlS98 CHrlS98 commented Apr 14, 2023

Mostly documentation update on scil_compute_asym_odf_metrics.py. Updated name of args to agree with literature, in particular:

C. Poirier and M. Descoteaux, "Filtering Methods for Asymmetric ODFs:
Where and How Asymmetry Occurs in the White Matter." bioRxiv. 2022 Jan 1;
2022.12.18.520881. doi: https://doi.org/10.1101/2022.12.18.520881

Also NuFiD estimation can be done on signal expressed in any basis (does not require full basis anymore).

EDIT: I will accelerate the script once PR #712 is merged (DIPY upgrade contains a cythonized asymmetric peak extraction implementation).

EDIT: Above edit is done.

@arnaudbore arnaudbore self-requested a review April 14, 2023 16:42
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Build passed ! Good Job 🍻 !

@CHrlS98 CHrlS98 changed the title [RF] Refactor asym_odf_metrics script [WIP] Refactor asym_odf_metrics script Apr 24, 2023
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Build passed ! Good Job 🍻 !

@CHrlS98 CHrlS98 changed the title [WIP] Refactor asym_odf_metrics script Refactor asym_odf_metrics script May 9, 2023
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LGTM

@arnaudbore arnaudbore merged commit 127dc51 into scilus:master May 17, 2023
@CHrlS98 CHrlS98 deleted the aodf-metrics branch May 17, 2023 18:03
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2 participants