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merfin_hist module added#5300

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rodtheo wants to merge 29 commits intonf-core:masternf-core/modules:masterfrom rodtheo:merfin_histCopy head branch name to clipboard

+6,237-340

Commits

Commits on Mar 20, 2024

• merfin_hist module added

  rodtheo

  committed
  951032f

• Add module seqfu/stats (#5275)

  Show description for 383a1fa
  

  telatin

  and

  sateeshperi

  authored
  383a1fa

• nf-test bases2fastq (#5272)

  Show description for c2342b4
  

  3 peopleauthored
  c2342b4

• update paths for VEP (#5281)

  Show description for f42872b
  maxulysse

  authored
  f42872b

• 4557 new module kaijumergeoutputs + stub Kraken2/Kraken2 (#5249)

  Show description for 653218e
  Joon-Klaps

  authored
  653218e

• gatk4_asereadcounter add updated meta and nf-tests (#5164)

  Show description for 89cf292
  

  3 peopleauthored
  89cf292

• Add README to modules build with Docker (#4935)

  Show description for 60a7dba
  

  maxulysse

  and

  matthdsm

  authored
  60a7dba

• add cram/index support to bwamem2 (#5248)

  Show description for 3afb95b
  matthdsm

  authored
  3afb95b

• Bamstats (#4474)

  Show description for 8487a44
  

  3 peopleauthored
  8487a44

• Add wittyer as module (#5171)

  Show description for 61f2ea5
  

  3 peopleauthored
  61f2ea5

• Remove unnecessary .view() in subworkflows/nf-core/vcf_phase_shapeit5 & tests/modules/nf-core/shapeit5/ligate/main.nf (#5280)

  Show description for dcf17cc
  

  4 peopleauthored
  dcf17cc

• Igv reports (#5263)

  Show description for 0c39191
  

  soulj

  and

  telatin

  authored
  0c39191

• Revert "update kallistobustools count output list" (#5307)

  Show description for 53c2b46
  fmalmeida

  authored
  53c2b46

• Revert "add paths in output directive in cellranger cout module" (#5306)

  Show description for 1774f78
  fmalmeida

  authored
  1774f78

• Remove AMRFinderPlus DB update on each invocation (#5232)

  Show description for 9d0f89b
  

  oschwengers

  and

  jasmezz

  authored
  9d0f89b

• Add subworkflow mapAD (#5239)

  Show description for 9f892b5
  jch-13

  authored
  9f892b5

• Leviosam2 index (#5316)

  Show description for 6920a61
  

  lgrochowalski

  and

  zxBIB Grochowalski,Lukasz (GCBDS) EXTERNAL

  authored
  6920a61

• Added contrast limited adaptive histogram equalization module (#5268)

  Show description for 7b29d1b
  

  kbestak

  and

  FloWuenne

  authored
  7b29d1b

• add cram/index support to dragmap (#5303)

  Show description for dd2757c
  matthdsm

  authored
  dd2757c

• scimap/spatiallda (#5260)

  Show description for bf021bf
  migueLib

  authored
  bf021bf

• New module svtypersso (#5311)

  Show description for 4685ac9
  tstoeriko

  authored
  4685ac9

• Add and update - picard/gatk4 - addorreplacereadgroups (#5302)

  Show description for c331b11
  

  3 peopleauthored
  c331b11

• Tcoffee tcs (#5288)

  Show description for 2d5ea49
  alessiovignoli

  authored
  2d5ea49

• Add module nanofilt (#5290)

  Show description for fc63cd1
  lfreitasl

  authored
  fc63cd1

• Add president module (#5256)

  Show description for 15e2db9
  

  paulwolk

  and

  sateeshperi

  authored
  15e2db9

• merfin_hist module added

  rodtheo

  committed
  1332943

• nf-test with multiple inputs fixed

  rodtheo

  committed
  f9fdd0b

• nf-tests insert file URLs instead of test_data

  rodtheo

  committed
  a83c25d

• fix merging issues

  rodtheo

  committed
  f67a420