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Remove superseded command column
Test #101: Commit 7fe4497 pushed by bede
November 22, 2023 01:49 5m 20s main
November 22, 2023 01:49 5m 20s
Optional name-sorted deterministic read ordering (for Bowtie2)
Test #100: Commit b5fada5 pushed by bede
November 22, 2023 01:43 3m 13s sort
November 22, 2023 01:43 3m 13s
Fix broken links in supp text
Test #99: Commit 6b784c7 pushed by bede
November 11, 2023 22:28 2m 34s main
November 11, 2023 22:28 2m 34s
Updated supplementary materials
Test #98: Commit 4307e40 pushed by bede
November 11, 2023 22:24 3m 31s main
November 11, 2023 22:24 3m 31s
0.2.0
Test #97: Commit e408e33 pushed by bede
November 10, 2023 14:46 3m 2s 0.2.0
November 10, 2023 14:46 3m 2s
0.2.0
Test #96: Commit e408e33 pushed by bede
November 10, 2023 14:46 5m 44s main
November 10, 2023 14:46 5m 44s
4 samtools fastq threads, restores space before /1, decontaminating--…
Test #95: Commit 78940bf pushed by bede
November 10, 2023 14:40 3m 36s main
November 10, 2023 14:40 3m 36s
Pin bowtie2 2.4.5
Test #94: Commit 4431bdd pushed by bede
November 9, 2023 12:54 3m 15s main
November 9, 2023 12:54 3m 15s
Revert to min chain score of 40 for ONT until further testing
Test #93: Commit e544f7d pushed by bede
November 7, 2023 15:18 2m 55s main
November 7, 2023 15:18 2m 55s
Add, test rename field (bool) to decontamination log
Test #92: Commit ca6fb3e pushed by bede
October 23, 2023 10:50 2m 49s main
October 23, 2023 10:50 2m 49s
Fix test and pin bowtie2=2.5.2, addressing issue #21
Test #91: Commit 3568169 pushed by bede
October 23, 2023 10:13 2m 43s main
October 23, 2023 10:13 2m 43s
Remove space before /1 and /2 suffix for paired FASTQ files
Test #90: Commit 902e220 pushed by bede
October 23, 2023 09:42 2m 27s main
October 23, 2023 09:42 2m 27s