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Fix bitwise logic with --invert and paired fastq input, fix tests Test #190: Commit cc8a101 pushed by bede
December 13, 2024 20:58 57s main
main
December 13, 2024 20:58 57s
Update README section on custom indexes Test #188: Commit 99a33bb pushed by bede
December 12, 2024 18:46 56s main
main
December 12, 2024 18:46 56s
Update CI Test #187: Commit 13bb4d9 pushed by bede
December 12, 2024 18:14 1m 16s main
main
December 12, 2024 18:14 1m 16s
Bump CI MacOS version Test #177: Commit 1b6f2fe pushed by bede
December 12, 2024 17:19 20s main
main
December 12, 2024 17:19 20s
Add mouse-mm39 standard index Test #175: Commit 7d25177 pushed by bede
November 29, 2024 16:19 1m 55s main
main
November 29, 2024 16:19 1m 55s
Clarify docs and CLI help wrt short/long read inference via fastq1 an… Test #174: Commit 9634e7a pushed by bede
November 15, 2024 15:11 2m 31s main
main
November 15, 2024 15:11 2m 31s
Quote aligner paths to accommodate spaces in paths Test #173: Commit 6ad8aeb pushed by bede
October 22, 2024 11:14 2m 42s main
main
October 22, 2024 11:14 2m 42s
Merge branch micromamba into main Test #172: Commit 5f0c532 pushed by bede
October 21, 2024 23:04 1m 49s main
main
October 21, 2024 23:04 1m 49s
Use Micromamba base image, remove defaults channel Test #171: Commit 95f3a95 pushed by bede
October 21, 2024 23:00 1m 54s micromamba
micromamba
October 21, 2024 23:00 1m 54s
Pin Miniforge image in Dockerfile (fixes #43) Test #170: Commit 1ca8e52 pushed by bede
September 12, 2024 23:05 2m 17s main
main
September 12, 2024 23:05 2m 17s
Add __main__ to CLI Test #169: Commit 9b58185 pushed by bede
July 17, 2024 10:44 2m 50s main
main
July 17, 2024 10:44 2m 50s
Remove unused argument Test #168: Commit 186a08a pushed by bede
July 15, 2024 17:05 2m 54s main
main
July 15, 2024 17:05 2m 54s
Improve instructions for using custom indexes Test #167: Commit 2c337b0 pushed by bede
May 25, 2024 09:28 2m 46s main
main
May 25, 2024 09:28 2m 46s
From Black to Ruff Test #166: Commit d571108 pushed by bede
May 16, 2024 10:26 2m 45s main
main
May 16, 2024 10:26 2m 45s
1.1.0 Test #165: Commit cb98c9d pushed by bede
April 10, 2024 21:24 3m 50s main
main
April 10, 2024 21:24 3m 50s
Test Test #164: by bede
April 10, 2024 21:24 2m 43s 1.1.0
1.1.0
April 10, 2024 21:24 2m 43s
Simplifies Dockerfile (#33), adds masked database selection advice Test #163: Commit c2f38c3 pushed by bede
April 10, 2024 21:10 2m 49s main
main
April 10, 2024 21:10 2m 49s
Fix readme typo Test #162: Commit 9b5881d pushed by bede
April 10, 2024 14:45 2m 41s main
main
April 10, 2024 14:45 2m 41s
Add clear instructions for unpaired short reads (#34) Test #161: Commit f7891a3 pushed by bede
April 10, 2024 14:41 2m 50s main
main
April 10, 2024 14:41 2m 50s
Cross-platform override of index cache location with HOSTILE_CACHE_DIR Test #160: Commit 57be277 pushed by bede
March 7, 2024 14:30 3m 4s main
main
March 7, 2024 14:30 3m 4s
Allow cross-platform override of the index cache directory via Test #159: Commit ca3bb1e pushed by bede
March 7, 2024 14:28 2m 55s main
main
March 7, 2024 14:28 2m 55s
Add instructions for overriding the default index storage location Test #158: Commit c6661e2 pushed by bede
March 5, 2024 12:01 2m 55s main
main
March 5, 2024 12:01 2m 55s
Mention RAM requirements in readme and in the event of a crash Test #157: Commit 82b3a5d pushed by bede
March 1, 2024 13:17 3m 26s main
main
March 1, 2024 13:17 3m 26s
Fix MyPy issues Test #156: Commit be4ba32 pushed by bede
January 30, 2024 18:35 3m 51s main
main
January 30, 2024 18:35 3m 51s
Fix docstring typo Test #155: Commit c61409b pushed by bede
January 29, 2024 18:55 5m 21s main
main
January 29, 2024 18:55 5m 21s