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Add basic workflow diagram
Test #216: Commit 1e16f4a pushed by bede
December 20, 2024 16:09 1m 10s main
December 20, 2024 16:09 1m 10s
Add basic workflow diagram
Test #215: Commit 07cc5ec pushed by bede
December 20, 2024 16:00 1m 9s main
December 20, 2024 16:00 1m 9s
Readme typos, CLI help formatting
Test #214: Commit 3ec85a0 pushed by bede
December 19, 2024 19:26 1m 8s main
December 19, 2024 19:26 1m 8s
Mention stdout in fastq1 fastq2 CLI help, readme intro
Test #213: Commit 0aa3a52 pushed by bede
December 19, 2024 17:53 1m 21s main
December 19, 2024 17:53 1m 21s
2.0.0 release detail
Test #212: Commit b024e7b pushed by bede
December 19, 2024 16:38 1m 17s main
December 19, 2024 16:38 1m 17s
New index-related subcommands
Test #211: Commit 2f601cd pushed by bede
December 19, 2024 15:29 1m 33s main
December 19, 2024 15:29 1m 33s
Changelog structure
Test #210: Commit 53f7290 pushed by bede
December 18, 2024 16:42 1m 26s main
December 18, 2024 16:42 1m 26s
Add changelog
Test #209: Commit 622aef5 pushed by bede
December 18, 2024 16:38 1m 26s main
December 18, 2024 16:38 1m 26s
68 tests passing
Test #208: Commit fec40c6 pushed by bede
December 18, 2024 15:56 1m 8s main
December 18, 2024 15:56 1m 8s
Support stdin for Bowtie2 (Minimap2 not yet passing test
Test #207: Commit f6ef634 pushed by bede
December 17, 2024 18:28 1m 9s main
December 17, 2024 18:28 1m 9s
Rename --offline to --airplane to free up -o for --output
Test #206: Commit d3045aa pushed by bede
December 17, 2024 14:17 1m 5s main
December 17, 2024 14:17 1m 5s
Support stdin for single/unpaired reads with --fastq1 -
Test #205: Commit b07f7d8 pushed by bede
December 17, 2024 14:09 1m 6s main
December 17, 2024 14:09 1m 6s
Support CASAVA 1.8+ style headers (--casava) #41
Test #204: Commit c71e024 pushed by bede
December 17, 2024 11:10 1m 3s main
December 17, 2024 11:10 1m 3s
Support CASAVA 1.8+ style headers (--casava) #41
Test #203: Commit eb83fa5 pushed by bede
December 17, 2024 11:09 1m 10s main
December 17, 2024 11:09 1m 10s
Partial support for CASAVA 1.8+ style headers (--casava) #41
Test #202: Commit dd5d6bb pushed by bede
December 17, 2024 10:17 1m 13s main
December 17, 2024 10:17 1m 13s
Paired read stdout example
Test #201: Commit 0d47ee2 pushed by bede
December 16, 2024 18:13 1m 17s main
December 16, 2024 18:13 1m 17s
Smart thread count allocation between alignment and compression
Test #200: Commit 637e387 pushed by bede
December 16, 2024 17:50 1m 9s main
December 16, 2024 17:50 1m 9s
Error msg for mismatched read counts, update log output for stdout, test
Test #199: Commit 493b44a pushed by bede
December 16, 2024 14:33 1m 41s main
December 16, 2024 14:33 1m 41s
Error msg for mismatched read counts, update log output for stdout, test
Test #198: Commit 73c1cf7 pushed by bede
December 16, 2024 13:42 1m 5s main
December 16, 2024 13:42 1m 5s
Merge branch 'mmi-cache'
Test #197: Commit b5ccc77 pushed by bede
December 16, 2024 13:09 1m 12s main
December 16, 2024 13:09 1m 12s
Fix tests
Test #196: Commit 4b220b1 pushed by bede
December 14, 2024 13:55 1m 1s main
December 14, 2024 13:55 1m 1s
Remove inserted space before /1 and /2 when renaming
Test #195: Commit 695d494 pushed by bede
December 14, 2024 13:51 1m 13s main
December 14, 2024 13:51 1m 13s
Soften pin on 3.10, Add CI 3.13 to CI
Test #194: Commit 6c6318b pushed by bede
December 14, 2024 01:38 1m 9s main
December 14, 2024 01:38 1m 9s
Bump CI OS matrix
Test #192: Commit 831a6c1 pushed by bede
December 14, 2024 01:24 1m 4s main
December 14, 2024 01:24 1m 4s
Bump CI OS matrix
Test #191: Commit a87ca28 pushed by bede
December 14, 2024 01:22 49s main
December 14, 2024 01:22 49s