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Fix tests
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bede committed Dec 14, 2024
1 parent 695d494 commit 4b220b1
Showing 1 changed file with 5 additions and 5 deletions.
10 changes: 5 additions & 5 deletions tests/test_all.py
Original file line number Diff line number Diff line change
Expand Up @@ -270,7 +270,7 @@ def test_paired_rename(tmp_path):
first_line = get_nth_line_of_gzip_file(
tmp_path / "tuberculosis_1_2.clean_1.fastq.gz"
)
assert first_line == "@1 /1"
assert first_line == "@1/1"
assert "rename" in stats[0]["options"]


Expand Down Expand Up @@ -493,10 +493,10 @@ def test_paired_sort_rename(tmp_path):
tmp_path / "sars-cov-2_100_2.clean_2.fastq.gz", line_number=5
)
assert stats[0]["reads_out"] == 6
assert first_line_1 == "@1 /1"
assert first_line_2 == "@1 /2"
assert fifth_line_1 == "@2 /1"
assert fifth_line_2 == "@2 /2"
assert first_line_1 == "@1/1"
assert first_line_2 == "@1/2"
assert fifth_line_1 == "@2/1"
assert fifth_line_2 == "@2/2"


def test_minimap2_aligner_args(tmp_path):
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