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Fix readme typo
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bede committed Apr 10, 2024
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Expand Up @@ -148,7 +148,7 @@ INFO: Cleaning complete
**Short unpaired reads, save log**
By default, single fastqs are assumed to be long reads. Override this by specifying `--aligner bowtie2` when decontaminating unpaired shorts reads.
By default, single fastqs are assumed to be long reads. Override this by specifying `--aligner bowtie2` when decontaminating unpaired short reads.
```bash
$ hostile clean --aligner bowtie2 --fastq1 tests/data/human_1_1.fastq.gz > log.json
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