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Log mode explicitly Test #154: Commit c3e82bd pushed by bede
January 29, 2024 18:23 4m 48s main
main
January 29, 2024 18:23 4m 48s
Add Biocontainer caveat, align env pins with bioconda recipe Test #153: Commit 2bfb8d9 pushed by bede
January 25, 2024 00:52 4m 6s main
main
January 25, 2024 00:52 4m 6s
1.0.0 Test #152: Commit 247ae42 pushed by bede
January 22, 2024 18:25 3m 5s 1.0.0
1.0.0
January 22, 2024 18:25 3m 5s
1.0.0 Test #151: Commit 247ae42 pushed by bede
January 22, 2024 18:25 4m 9s main
main
January 22, 2024 18:25 4m 9s
1.0.0 Test #150: Commit 2635138 pushed by bede
January 22, 2024 18:24 3m 45s main
main
January 22, 2024 18:24 3m 45s
1.0.0 Test #149: Commit e5fcf77 pushed by bede
January 22, 2024 17:53 3m 25s main
main
January 22, 2024 17:53 3m 25s
1.0.0 Test #148: Commit e5fcf77 pushed by bede
January 22, 2024 17:53 3m 19s 1.0.0
1.0.0
January 22, 2024 17:53 3m 19s
Masking: restore kmer length and step customisation Test #147: Commit 7a53255 pushed by bede
January 22, 2024 12:48 3m 41s main
main
January 22, 2024 12:48 3m 41s
Improved masking protocol, tests passing Test #146: Commit 01d7f84 pushed by bede
January 22, 2024 11:34 3m 18s main
main
January 22, 2024 11:34 3m 18s
Minimap2-based masking with -N and -p to report more alignments Test #145: Commit 40316d3 pushed by bede
January 21, 2024 15:04 2m 1s main
main
January 21, 2024 15:04 2m 1s
Make fetch subcommand use manifest.json Test #144: Commit 9dae0a3 pushed by bede
January 21, 2024 13:57 6m 7s main
main
January 21, 2024 13:57 6m 7s
Use remote manifest.json to verify checksums Test #143: Commit 1e81deb pushed by bede
January 21, 2024 13:23 3m 4s main
main
January 21, 2024 13:23 3m 4s
Merge v1 Test #142: Commit d155a9a pushed by bede
January 20, 2024 15:01 3m 29s main
main
January 20, 2024 15:01 3m 29s
Arbitrary index discovery and cacheing using canonical name, adds off… Test #141: Commit 4cf9110 pushed by bede
January 20, 2024 14:41 3m 39s v1
v1
January 20, 2024 14:41 3m 39s
Do not replace symlinked FASTQ paths with their target Test #140: Commit cabd2d8 pushed by bede
January 19, 2024 11:31 3m 35s main
main
January 19, 2024 11:31 3m 35s
v1 WIP Test #137: Commit 4ff81f0 pushed by bede
January 19, 2024 11:20 1m 38s v1
v1
January 19, 2024 11:20 1m 38s
Remove potentially surprising fallback to Minimap2 if an error is enc… Test #136: Commit 4552394 pushed by bede
January 16, 2024 12:08 3m 45s main
main
January 16, 2024 12:08 3m 45s
Adds article pdf Test #134: Commit 187bf4b pushed by bede
January 14, 2024 22:07 3m 39s main
main
January 14, 2024 22:07 3m 39s
Fixes issue where empty output FASTQs were invalid gzip files (#24) Test #133: Commit 0b5ad56 pushed by bede
January 13, 2024 16:01 5m 59s main
main
January 13, 2024 16:01 5m 59s
Adds version to log output, updates options schema Test #132: Commit c58479a pushed by bede
January 13, 2024 15:34 2m 53s main
main
January 13, 2024 15:34 2m 53s
Adds 'options' key to log; fixes mutual exclusivity of rename and inv… Test #131: Commit c7e0776 pushed by bede
January 13, 2024 15:03 5m 39s main
main
January 13, 2024 15:03 5m 39s
Fix broken --reorder for paired minimap2 under Linux Test #130: Commit 422ce2e pushed by bede
January 13, 2024 13:32 2m 55s main
main
January 13, 2024 13:32 2m 55s
Invert matches with --invert Test #129: Commit ae632d7 pushed by bede
January 13, 2024 13:14 1m 40s main
main
January 13, 2024 13:14 1m 40s
Masking: allow custom k-mer length and interval Test #128: Commit 2873e2f pushed by bede
January 11, 2024 20:17 6m 4s main
main
January 11, 2024 20:17 6m 4s
Masking: show absolute paths of masked genome & index on completion Test #127: Commit a9e9799 pushed by bede
January 11, 2024 19:55 3m 45s main
main
January 11, 2024 19:55 3m 45s