Revert to min chain score of 40 for ONT until further testing

bede · Nov 7, 2023 · e544f7d · e544f7d
1 parent ca6fb3e
commit e544f7d
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/hostile/lib.py b/src/hostile/lib.py
@@ -58,7 +58,7 @@
             # cdn_base_url="http://localhost:8000",  # python -m http.server
             cdn_base_url=f"https://objectstorage.uk-london-1.oraclecloud.com/n/lrbvkel2wjot/b/human-genome-bucket/o",
             data_dir=XDG_DATA_DIR,
-            cmd="{BIN_PATH} -ax map-ont -m 50 --secondary no -t {THREADS} '{REF_ARCHIVE_PATH}' '{FASTQ}'",
+            cmd="{BIN_PATH} -ax map-ont -m 40 --secondary no -t {THREADS} '{REF_ARCHIVE_PATH}' '{FASTQ}'",
             paired_cmd="{BIN_PATH} -ax sr -m 40 --secondary no -t {THREADS} '{REF_ARCHIVE_PATH}' '{FASTQ1}' '{FASTQ2}'",
             ref_archive_fn="human-t2t-hla.fa.gz",
             idx_name="human-t2t-hla.fa.gz",