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NDPI_Export_Regions_Tool

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Volker edited this page Apr 26, 2022 · 8 revisions

The tool exports rectangular regions, defined with the NDP.view 2 software from the highest resolution version of the image and saves them as tif-files.

You can find the source code in git-hub here.

Getting started

To install the tool, download the file ndpi_export_regions.ijm and save it into the folder macros/toolsets of your FIJI installation. You also need to install the tiff-tags plugin.

Select the "NDPI_Export_Regions_Tool" tool from the >> button of the ImageJ launcher.

export-ndpi-toolbar.png

Usage

Click the button and select the input folder. The input folder must contain pairs of ndpi and ndpa files. The regions will be exported to a subfolder of the input folder names zones.

Restrictions

The tool only exports rectangular regions.

Publications using the tool

  1. Boissière‑Michot, F., Mollevi, C., Baecker, V., Crapez, E., Jacot, W., 2022. In situ hybridization for the assessment of urokinase plasminogen activator and plasminogen activator inhibitor type‑1 in formalin‑fixed paraffin‑embedded breast cancer specimens. Int J Mol Med 49, 82. https://doi.org/10.3892/ijmm.2022.5138
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