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remove once pangolin 4.1.3 is available in bioconda
todo
#569
by github-actions
bot
was closed Oct 25, 2023
fix: squeeze is deprecated
enhancement
New feature or request
#530
by alethomas
was closed May 13, 2022
Replace outdated df.append
enhancement
New feature or request
#496
by alethomas
was closed Jul 13, 2022
Ability to identify the ORF1ab mutations as mutations of the individual functional proteins
enhancement
New feature or request
#482
by thomasbtf
was closed Mar 4, 2022
Add a rule for converting bed to bedpe files
enhancement
New feature or request
#381
by thomasbtf
was closed Feb 2, 2022
Ion Torrent
enhancement
New feature or request
high priority
paper
#361
by thomasbtf
was closed Dec 9, 2021
Parallel Analysis of same Technology
enhancement
New feature or request
paper
#356
by thomasbtf
was closed Jan 3, 2022
1 task
Test Cases for Varlociraptor of ONT Data
enhancement
New feature or request
paper
#355
by thomasbtf
was closed Dec 23, 2021
1 task
Patient vs. Environmental Sample Execution
enhancement
New feature or request
paper
#352
by thomasbtf
was closed Jan 3, 2022
Standardise nomenclature of variants of concern and Variants of interest
bug
Something isn't working
#344
by thomasbtf
was closed Jan 3, 2022
Fix aggregation of sample in variants and lineages over time plot
bug
Something isn't working
#339
by thomasbtf
was closed Mar 1, 2022
Include scorpio_call in overview table
enhancement
New feature or request
#337
by thomasbtf
was closed Dec 15, 2021
Using the Snakemake Workflow Catalogue as deployment results in SyntaxError
bug
Something isn't working
#336
by thomasbtf
was closed Dec 7, 2021
Make Sending Lab column in RKI report csv adjustable via the config file
enhancement
New feature or request
paper
#334
by thomasbtf
was closed Mar 1, 2022
Change multiqc rules back to MultiQC wrapper once v1.11 is released
todo
#333
by github-actions
bot
was closed Jan 19, 2022
Make the incoming and archive structure data-handling optional
enhancement
New feature or request
paper
#327
by thomasbtf
was closed Feb 16, 2022
Update and fix schema validation
bug
Something isn't working
#326
by thomasbtf
was closed Dec 14, 2021
WorkflowError("For PEP support, please install peppy.") when running workflow
bug
Something isn't working
#325
by lenakinzel
was closed Feb 18, 2022
Make names of rules more descriptive
enhancement
New feature or request
#322
by thomasbtf
was closed Dec 17, 2021
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