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Make Sending Lab column in RKI report csv adjustable via the config file #334

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thomasbtf opened this issue Nov 24, 2021 · 0 comments · Fixed by #492
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Make Sending Lab column in RKI report csv adjustable via the config file #334

thomasbtf opened this issue Nov 24, 2021 · 0 comments · Fixed by #492
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enhancement New feature or request paper

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@thomasbtf
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thomasbtf commented Nov 24, 2021

Make Sending Lab column in RKI csv adjustable via the config file. Add ad new parameter to the rule rki_report (https://github.com/IKIM-Essen/uncovar/blob/master/workflow/rules/generate_output.smk#L83), which replaces the hardcoded Sending Lab number from UK-Essen.
https://github.com/IKIM-Essen/uncovar/blob/master/workflow/scripts/generate-rki-output.py#L25

Moreover, we can use the date of the current run (wildcards.date) to refill the column DATE_DRAW (https://github.com/IKIM-Essen/uncovar/blob/master/workflow/scripts/generate-rki-output.py#L26).

@thomasbtf thomasbtf changed the title Make Sending Lab in RKI csv adjustable via the config file Make Sending Lab column in RKI report csv adjustable via the config file Nov 28, 2021
@thomasbtf thomasbtf added enhancement New feature or request paper labels Dec 2, 2021
@alethomas alethomas self-assigned this Dec 10, 2021
@lenakinzel lenakinzel assigned lenakinzel and unassigned alethomas Dec 14, 2021
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