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Live isosurface (backend) #3313

Closed
9 of 10 tasks
philippotto opened this issue Oct 4, 2018 · 0 comments · Fixed by #3495
Closed
9 of 10 tasks

Live isosurface (backend) #3313

philippotto opened this issue Oct 4, 2018 · 0 comments · Fixed by #3495
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@jfrohnhofen

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@philippotto
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philippotto commented Oct 4, 2018 •
edited by jfrohnhofen
Loading

probably "semi live" via background computation

backend:

  • change client protocol to use raw float arrays
  • expose voxelDim parameter (size of one voxel in the marching cubes algorithm) to client
  • apply proper scaling
  • support different zoomSteps
  • https://stackoverflow.com/questions/35843167/three-js-smoothing-normals-using-mergevertices
  • get mappings to work properly
  • make the code ported from Java more scalaesque
  • skip subvolumes that don't contain the current segment id
  • add mapping cache
  • perf perf perf (do as necessary)
@jfrohnhofen jfrohnhofen mentioned this issue Oct 25, 2018
Closed
jfrohnhofen added a commit that referenced this issue Oct 26, 2018
@jfrohnhofen
removed debug print (#3313)
32f2dc8
jfrohnhofen added a commit that referenced this issue Nov 2, 2018
@jfrohnhofen
Restructure isosurface actor interface (#3313)
ac40e8f
jfrohnhofen added a commit that referenced this issue Nov 8, 2018
@jfrohnhofen
support for v oxel dimensions, #3313
27ca052
jfrohnhofen added a commit that referenced this issue Nov 8, 2018
@jfrohnhofen
loading and parsing mappings, #3313
9f71bef
jfrohnhofen added a commit that referenced this issue Nov 8, 2018
@jfrohnhofen
parsing mappings, generics, #3313
87878ce
jfrohnhofen added a commit that referenced this issue Nov 8, 2018
@jfrohnhofen
Merge branch 'isosurface' into isosurface-testing
f903f81 
* isosurface:
  support for v oxel dimensions, #3313
jfrohnhofen added a commit that referenced this issue Nov 8, 2018
@jfrohnhofen
add mapping to isosurface request, #3313
913bd48
jfrohnhofen added a commit that referenced this issue Nov 8, 2018
@jfrohnhofen
loading and parsing mappings, #3313
101c68c
jfrohnhofen added a commit that referenced this issue Nov 8, 2018
@jfrohnhofen
Merge branch 'isosurface' into isosurface-testing
d77171c 
* isosurface:
  loading and parsing mappings, #3313
jfrohnhofen added a commit that referenced this issue Nov 8, 2018
@jfrohnhofen
Merge branch 'isosurface' into isosurface-testing
43b7ba0 
* isosurface:
  parsing mappings, generics, #3313
jfrohnhofen added a commit that referenced this issue Nov 14, 2018
@jfrohnhofen
use raw float array as isosurface protocol, #3313
49488ed
jfrohnhofen added a commit that referenced this issue Nov 14, 2018
@jfrohnhofen
use raw float arrays as protocol for isosurfaces, #3313
079c08e
jfrohnhofen added a commit that referenced this issue Nov 14, 2018
@jfrohnhofen
Merge branch 'isosurface' into isosurface-testing
6c2a8e1 
* isosurface:
  use raw float arrays as protocol for isosurfaces, #3313
jfrohnhofen added a commit that referenced this issue Nov 14, 2018
@jfrohnhofen
expose voxel dimensions as parameter, proper scale, #3313
152823f
jfrohnhofen added a commit that referenced this issue Nov 14, 2018
@jfrohnhofen
expose voxel dimensions as parameter, proper scale, #3313
ef7974c
jfrohnhofen added a commit that referenced this issue Nov 14, 2018
@jfrohnhofen
Merge branch 'isosurface' into isosurface-testing
65cbca5 
* isosurface:
  expose voxel dimensions as parameter, proper scale, #3313
  remove -v (verbose) from backend-tests in CI (#3425)
  Add recommended configuration to TaskTypes (backend only) (#3415)
  Even if initialData is disabled, insert local stores (#3421)
  Add REST API docs (#3376)
  clearer message when annotation couldnt be found while logged out (#3413)
  prepare release 18.11.0 (#3414)
  Handle Cross-Datastore Duplicates, introducing scratch datastores (#3394)
  restrict user visibility (#3389)
  Add REST API versioning support (second try) (#3408)
  Enable hybrid tracings by default (#3399)
jfrohnhofen added a commit that referenced this issue Nov 14, 2018
@jfrohnhofen
smooth shading, #3313
7b11c5a
jfrohnhofen added a commit that referenced this issue Nov 15, 2018
@jfrohnhofen
wip, #3313
0793fd8
jfrohnhofen added a commit that referenced this issue Nov 15, 2018
@jfrohnhofen
working on mappings, #3313
1ca3847
jfrohnhofen added a commit that referenced this issue Nov 15, 2018
@jfrohnhofen
Merge branch 'isosurface' into isosurface-testing
597c412 
* isosurface:
  working on mappings, #3313
  wip, #3313
jfrohnhofen added a commit that referenced this issue Nov 15, 2018
@jfrohnhofen
request via actor, #3313
4a5be05
jfrohnhofen added a commit that referenced this issue Nov 15, 2018
@jfrohnhofen
Merge branch 'isosurface' into isosurface-testing
32852e0 
* isosurface:
  request via actor, #3313
jfrohnhofen added a commit that referenced this issue Nov 22, 2018
@jfrohnhofen
mapping cache WIP, #3313
b317fc5
jfrohnhofen added a commit that referenced this issue Nov 22, 2018
@jfrohnhofen
mapping cache working, #3313
c3f00f4
jfrohnhofen added a commit that referenced this issue Nov 22, 2018
@jfrohnhofen
Merge branch 'isosurface' into isosurface-testing
6859c92 
* isosurface:
  mapping cache WIP, #3313
jfrohnhofen added a commit that referenced this issue Nov 22, 2018
@jfrohnhofen
Merge branch 'isosurface' into isosurface-testing
59f1775 
* isosurface:
  mapping cache working, #3313
jfrohnhofen added a commit that referenced this issue Nov 23, 2018
@jfrohnhofen
cubeSize is now vector, not scalar, #3313
043949d
jfrohnhofen added a commit that referenced this issue Nov 23, 2018
@jfrohnhofen
Refactoring, #3313
63aee6a
jfrohnhofen added a commit that referenced this issue Nov 24, 2018
@jfrohnhofen
support voxelDimensions in data requests, #3313
6840787
jfrohnhofen added a commit that referenced this issue Nov 24, 2018
@jfrohnhofen
Fix data requests with nnon-trivial voxelDimension, #3313
f342087
jfrohnhofen added a commit that referenced this issue Nov 24, 2018
@jfrohnhofen
fixing isosurfaces with nnew voxelDimensions data requests, #3313
5aaec42
jfrohnhofen added a commit that referenced this issue Nov 24, 2018
@jfrohnhofen
isosurface refactoring, #3313
10527cf
jfrohnhofen added a commit that referenced this issue Nov 24, 2018
@jfrohnhofen
skip locations where the segment id is not present, #3313
f688751
jfrohnhofen added a commit that referenced this issue Nov 24, 2018
@jfrohnhofen
Merge branch 'isosurface' into isosurface-testing
18973e3 
* isosurface:
  isosurface refactoring, #3313
  fixing isosurfaces with nnew voxelDimensions data requests, #3313
  Fix data requests with nnon-trivial voxelDimension, #3313
  support voxelDimensions in data requests, #3313
jfrohnhofen added a commit that referenced this issue Nov 24, 2018
@jfrohnhofen
Merge branch 'isosurface' into isosurface-testing
0b167fd 
* isosurface:
  skip locations where the segment id is not present, #3313
@jfrohnhofen jfrohnhofen changed the title Live isosurface Live isosurface (backend) Nov 24, 2018
@jfrohnhofen jfrohnhofen mentioned this issue Nov 24, 2018
Merged
3 tasks
jfrohnhofen added a commit that referenced this issue Dec 3, 2018
@jfrohnhofen
PR feedback, #3313
f4a6860
fm3 pushed a commit that referenced this issue Dec 12, 2018
@philippotto @fm3
Isosurface frontend (#3493)
987aed5 
* button in frontend

* startup parameters

* add mapping to isosurface request, #3313

* loading and parsing mappings, #3313

* build faster

* use raw float array as isosurface protocol, #3313

* expose voxel dimensions as parameter, proper scale, #3313

* smooth shading, #3313

* improve lighting for isosurface

* improve lighting and clean up code

* fix merge conflicts

* refactor isosurface front-end code and enable lookups according to bucket structure

* adapt code to cubeSize vector

* clean up

* clean up

* use mapped voxels if mapping is active; hide setting in non-view-mode
philippotto pushed a commit that referenced this issue Dec 12, 2018
@jfrohnhofen @philippotto
Isosurface generation (now inluding frontend) (#3495)
0638d53 
* Isosurface: route and actor setup

* isosurface wip

* removed debug print (#3313)

* add size parameter

* Restructure isosurface actor interface (#3313)

* isosurfaces roughly working

* support for v oxel dimensions, #3313

* loading and parsing mappings, #3313

* parsing mappings, generics, #3313

* use raw float arrays as protocol for isosurfaces, #3313

* expose voxel dimensions as parameter, proper scale, #3313

* wip, #3313

* working on mappings, #3313

* request via actor, #3313

* mapping cache WIP, #3313

* mapping cache working, #3313

* cubeSize is now vector, not scalar, #3313

* Refactoring, #3313

* support voxelDimensions in data requests, #3313

* Fix data requests with nnon-trivial voxelDimension, #3313

* fixing isosurfaces with nnew voxelDimensions data requests, #3313

* isosurface refactoring, #3313

* skip locations where the segment id is not present, #3313

* PR feedback, #3313

* move mappingservice out of holder

* Isosurface frontend (#3493)

* button in frontend

* startup parameters

* add mapping to isosurface request, #3313

* loading and parsing mappings, #3313

* build faster

* use raw float array as isosurface protocol, #3313

* expose voxel dimensions as parameter, proper scale, #3313

* smooth shading, #3313

* improve lighting for isosurface

* improve lighting and clean up code

* fix merge conflicts

* refactor isosurface front-end code and enable lookups according to bucket structure

* adapt code to cubeSize vector

* clean up

* clean up

* use mapped voxels if mapping is active; hide setting in non-view-mode

* update changelog
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Isosurface generation (now inluding frontend) scalableminds/webknossos
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@jfrohnhofen @philippotto