DV.7.1 diversity

[oobb45729]

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1. DV.7.1 > ORF1a:K3353R(A10323G) >150 seq. DV.7.1 with ORF1a:K3353R (>80 seq. Mainly Israel and Spain) #559 (Many Israeli sequences lack coverage at S:455-456) DV.7.1 with ORF1a:K3353R (>150 seq. Mainly Spain, Israel, and USA) cov-lineages/pango-designation#2261
2. DV.7.1.1: DV.7.1 > ORF1a:K3353R(A10323G) > S:K679R(A23598G) #559(DV.7.1)+S:K679R(14 seqs, Spain, Switzerland, Iceland, France Canada) #732
3. DV.7.1.2: DV.7.1 > ORF1a:A4162V(C12750T)+ORF10:M1V(A29558G) DV.7.1 with ORF1a:A4162V and ORF10:M1V (184) 12 countries cov-lineages/pango-designation#2258 DV.7.1 with ORF1a:A4162V and ORF10:M1V (123 seq) 8 countries  #697
4. DV.7.1.2 > nuc:A24373G > ORF1a:S2246L(C7002T) > S:G485R (G23015C) DV.7.1 (CH.1.1.1.7.1) sublineage on the proposed #2258 branch with S:G485R (30 seqs in France and US) #760
5. DV.7.1.2 > nuc:A24373G > Orf3a:D210E(C26022A) > Orf1a:L980S(T3204C) > S:K679R (A23598G) 6 seq. Another DV.7.1+S:K679R(8 seqs, UK) #750
6. DV.7.1 > N:T135A(A28676G) >100 seq. DV.7.1 sublineage with N:T135A (>60 seq) and a further sublineage with ORF1a:V3782F and ORF1a:T4175I (>20 seq) #729 DV.7.1.5 sublineage with ORF1a:V3782F and ORF1a:T4175I (>190 seq) cov-lineages/pango-designation#2238
7. DV.7.1 > ORF6:L61F(C27382T) >20 seq.
8. DV.7.1 > ORF6:L61F(C27382T) > nuc:G21724A+S:Q183K(C22109A)+nuc:T28007C+N:A217S(G28922T) DV.7.1+Orf6:L61F+S:Q183K,N:A217S(32 seqs, 8 countries) #765
9. DV.7.1 > nuc:C10228T > nuc:C10615T+nuc:T20833C+S:K478R(A22995G)+N:H300L(A29172T) 4 seq. DV.7.1+S:K478R, Orf1a_V1143F=nsp3_V325F 9 seqs in England, Spain and Netherland as of 10-10 #737

[oobb45729]

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[FedeGueli]

Thank you for your work @oobb45729