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DV.7.1+Orf6:L61F+S:Q183K,N:A217S(32 seqs, 8 countries) #765

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xz-keg opened this issue Sep 8, 2023 · 7 comments
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DV.7.1+Orf6:L61F+S:Q183K,N:A217S(32 seqs, 8 countries) #765

xz-keg opened this issue Sep 8, 2023 · 7 comments
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designated FLip = S:L455F / S:F456L S:183
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@xz-keg
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xz-keg commented Sep 8, 2023

DV.7.1+C27382T(Orf6:L61F)+G21724A, T28007C,C22109A, G28922T(S:Q183K,N:A217S)

GISAID query: G21724A, T28007C,C22109A, G28922T
No. of seqs: 8(Germany 1 Spain 4 UK 1 Australia 2)

First: EPI_ISL_18142748, Spain, 2023-8-2
Latest: EPI_ISL_18227496, UK, 2023-8-27

XBB* has S:Q183E, now DV.7.1 is mutating on 183 too.

usher

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@FedeGueli
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Ping @corneliusroemer
i suggest you to start designating main branches of DV.7.1:

  1. Orf1a:K3353R from DV.7.1 with ORF1a:K3353R (>150 seq. Mainly Spain, Israel, and USA) cov-lineages/pango-designation#2261
  2. Orf10:M1V from DV.7.1 with ORF1a:A4162V and ORF10:M1V (184) 12 countries cov-lineages/pango-designation#2258
  3. N:T135A from DV.7.1.5 sublineage with ORF1a:V3782F and ORF1a:T4175I (>190 seq) cov-lineages/pango-designation#2238
  4. Orf6:L61F from here.
    Schermata 2023-09-08 alle 10 53 38

@xz-keg xz-keg changed the title DV.7.1+Orf6:L61F+S:Q183K,N:A217S(8 seqs, 4 countries) DV.7.1+Orf6:L61F+S:Q183K,N:A217S(9 seqs, 4 countries) Sep 13, 2023
@xz-keg xz-keg changed the title DV.7.1+Orf6:L61F+S:Q183K,N:A217S(9 seqs, 4 countries) DV.7.1+Orf6:L61F+S:Q183K,N:A217S(12 seqs, 4 countries) Sep 15, 2023
@xz-keg
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xz-keg commented Sep 21, 2023

16, USA, France

@xz-keg xz-keg changed the title DV.7.1+Orf6:L61F+S:Q183K,N:A217S(12 seqs, 4 countries) DV.7.1+Orf6:L61F+S:Q183K,N:A217S(16 seqs, 6 countries) Sep 21, 2023
@xz-keg xz-keg changed the title DV.7.1+Orf6:L61F+S:Q183K,N:A217S(16 seqs, 6 countries) DV.7.1+Orf6:L61F+S:Q183K,N:A217S(17 seqs, 6 countries) Sep 26, 2023
@FedeGueli FedeGueli changed the title DV.7.1+Orf6:L61F+S:Q183K,N:A217S(17 seqs, 6 countries) DV.7.1+Orf6:L61F+S:Q183K,N:A217S(19 seqs, 7 countries) Sep 29, 2023
@xz-keg xz-keg changed the title DV.7.1+Orf6:L61F+S:Q183K,N:A217S(19 seqs, 7 countries) DV.7.1+Orf6:L61F+S:Q183K,N:A217S(23 seqs, 7 countries) Oct 3, 2023
@xz-keg
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xz-keg commented Oct 8, 2023

28, Slovenia

@xz-keg xz-keg changed the title DV.7.1+Orf6:L61F+S:Q183K,N:A217S(23 seqs, 7 countries) DV.7.1+Orf6:L61F+S:Q183K,N:A217S(28 seqs, 8 countries) Oct 8, 2023
@xz-keg xz-keg changed the title DV.7.1+Orf6:L61F+S:Q183K,N:A217S(28 seqs, 8 countries) DV.7.1+Orf6:L61F+S:Q183K,N:A217S(30 seqs, 8 countries) Oct 13, 2023
@xz-keg xz-keg changed the title DV.7.1+Orf6:L61F+S:Q183K,N:A217S(30 seqs, 8 countries) DV.7.1+Orf6:L61F+S:Q183K,N:A217S(32 seqs, 8 countries) Oct 16, 2023
@FedeGueli FedeGueli closed this as not planned Won't fix, can't repro, duplicate, stale Oct 20, 2023
FedeGueli referenced this issue in cov-lineages/pango-designation Nov 28, 2023
@FedeGueli FedeGueli added this to the DV.7.1.6 milestone Nov 28, 2023
@FedeGueli
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Designated DV.7.1.6 from cov-lineages/pango-designation@0bc95d2

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designated FLip = S:L455F / S:F456L S:183
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