Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Pseudo PR - Do not merge! #51

Closed
wants to merge 422 commits into from
Closed

Pseudo PR - Do not merge! #51

wants to merge 422 commits into from

Conversation

SusiJo
Copy link
Collaborator

@SusiJo SusiJo commented May 3, 2023

Many thanks to contributing to qbic-pipelines/bamtofastq!

Please fill in the appropriate checklist below (delete whatever is not relevant). These are the most common things requested on pull requests (PRs).

PR checklist

  • This comment contains a description of changes (with reason)
  • If you've fixed a bug or added code that should be tested, add tests!
  • If necessary, add test data to testdata/
  • Ensure the test suite passes (nextflow run . -profile test,docker).
  • Make sure your code lints (nf-core lint .).
  • Documentation in docs is updated
  • CHANGELOG.md is updated
  • README.md is updated

Learn more about contributing: https://github.com/qbic-pipelines/bamtofastq/tree/master/.github/CONTRIBUTING.md

FriederikeHanssen and others added 30 commits September 9, 2020 18:17
Co-authored-by: Gisela Gabernet <[email protected]>
Co-authored-by: Gisela Gabernet <[email protected]>
Co-authored-by: Gisela Gabernet <[email protected]>
Co-authored-by: Gisela Gabernet <[email protected]>
Co-authored-by: Gisela Gabernet <[email protected]>
Co-authored-by: Gisela Gabernet <[email protected]>
Co-authored-by: FriederikeHanssen <[email protected]>
Co-authored-by: FriederikeHanssen <[email protected]>
Co-authored-by: FriederikeHanssen <[email protected]>
Co-authored-by: FriederikeHanssen <[email protected]>
Co-authored-by: FriederikeHanssen <[email protected]>
Co-authored-by: FriederikeHanssen <[email protected]>
Copy link
Member

@JoseEspinosa JoseEspinosa left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Awesome job @SusiJo! 🚀
Just drop some small suggestions

CITATIONS.md Show resolved Hide resolved
README.md Outdated Show resolved Hide resolved
README.md Outdated Show resolved Hide resolved
modules/local/check_paired_end.nf Outdated Show resolved Hide resolved
nextflow.config Outdated Show resolved Hide resolved
modules/local/check_paired_end.nf Outdated Show resolved Hide resolved
@SusiJo
Copy link
Collaborator Author

SusiJo commented May 11, 2023

Thanks for the review @JoseEspinosa! I applied your suggestions in the PR #54. Could you take another look, please? 🙏

SusiJo and others added 2 commits May 11, 2023 09:30
modules/local/check_paired_end.nf Outdated Show resolved Hide resolved
modules/nf-core/samtools/collatefastq/main.nf Show resolved Hide resolved
nextflow.config Show resolved Hide resolved
workflows/bamtofastq.nf Outdated Show resolved Hide resolved
workflows/bamtofastq.nf Outdated Show resolved Hide resolved
workflows/bamtofastq.nf Show resolved Hide resolved
subworkflows/local/prepare_indices.nf Outdated Show resolved Hide resolved
workflows/bamtofastq.nf Outdated Show resolved Hide resolved
@SusiJo
Copy link
Collaborator Author

SusiJo commented May 12, 2023

@JoseEspinosa : since you requested changes, is there anything else I should add to the current Code review PR #55 ?

@SusiJo
Copy link
Collaborator Author

SusiJo commented May 12, 2023

@maxulysse Thanks for the review!

Copy link

@sateeshperi sateeshperi left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

LGTM

Copy link
Member

@JoseEspinosa JoseEspinosa left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

LGTM! Awesome job! 🚀

@FriederikeHanssen
Copy link
Contributor

Approved by three, will merge #50 to master

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

7 participants