Release 2024.12

What's Changed

• Delete unused tests2 directory by @shreddd in #784
• Replace deprecated utcnow() calls with now(timezone.utc) by @shreddd in #788
• Add "Translators" subsystem as option in PR template by @eecavanna in #793
• Remove reference to nonexistent tests2 directory by @eecavanna in #794
• Update bulk_validation_referential_integrity_check notebook to concur with refscan (no false positives) by @dwinston in #796
• Simplify local mongorestore of remote mongodump by @dwinston in #801
• Add was_generated_by index to functional_annotation_agg collection by @dwinston in #802
• Update /nmdcschema/{collection_name} API endpoint description to include performance-related guidance by @eecavanna in #803
• Post berkeley schema NCBI export pipeline updates by @sujaypatil96 in #807
• Document query parameters directly instead of via freeform text blurbs by @eecavanna in #804
• Implement notebook that migrates database from schema v11.1.0 to v11.2.0 by @eecavanna in #813
• Implement an API endpoint an admin can use to update a user's password by @eecavanna in #779
• Add mapping for multiple environments by @marySalvi in #741
• Display copy/pasteable HTTP Authorization header with Bearer token on Swagger UI for ORCiD-Authenticated user by @dwinston in #812
• Delete comment that impacted subsequent code once newlines were replaced by @eecavanna in #819
• Update Python packages to patch security issues reported by Dependabot by @eecavanna in #815
• Upgrade to nmdc-schema v11.2.1 by @pkalita-lbl in #825
• Update migration notebook's destination nmdc-schema version to 11.2.1 by @eecavanna in #827
• Filter biosamples/projects/analysis projects based on sequencingStrategy by @sujaypatil96 in #816
• Address documentation/docstring TODOs by @dwinston in #840
• Add option to GOLD translator to ignore field research sites by @sujaypatil96 in #833
• 696 update dagster op for materialize alldocs by @mkshah605 in #817
• Remove obsolete guidance from development guide by @shreddd in #842
• Update changesheets examples by @aclum in #841

New Contributors

• @marySalvi made their first contribution in #741
• @mkshah605 made their first contribution in #817

Full Changelog: v2.1.1...v2.2.0