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@microbiomedata

National Microbiome Data Collaborative

National Microbiome Data Collaborative

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  1. nmdc-schema nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    Python 27 8

  2. NMDC_documentation NMDC_documentation Public

    Document workflows, schemas, and portal

    2 3

Repositories

Showing 10 of 78 repositories
  • submission-schema Public
    microbiomedata/submission-schema’s past year of commit activity
    Python 1 MIT 1 50 7 Updated Nov 5, 2024
  • nmdc-server Public

    Data portal client and server for NMDC.

    microbiomedata/nmdc-server’s past year of commit activity
    Python 9 0 161 12 Updated Nov 5, 2024
  • nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    microbiomedata/nmdc-schema’s past year of commit activity
    Python 27 CC0-1.0 8 362 (1 issue needs help) 11 Updated Nov 5, 2024
  • nmdc_notebooks Public

    Jupyter Notebooks demonstrating R and Python-based access to NMDC metadata and data

    microbiomedata/nmdc_notebooks’s past year of commit activity
    Jupyter Notebook 5 CC0-1.0 0 1 1 Updated Nov 5, 2024
  • nmdc-runtime Public

    Runtime system for NMDC data management and orchestration

    microbiomedata/nmdc-runtime’s past year of commit activity
    HTML 7 3 102 (2 issues need help) 11 Updated Nov 5, 2024
  • ReadsQC Public
    microbiomedata/ReadsQC’s past year of commit activity
    WDL 3 6 3 2 Updated Nov 5, 2024
  • metaT Public

    Metatranscriptomics workflow

    microbiomedata/metaT’s past year of commit activity
    WDL 4 2 6 0 Updated Nov 4, 2024
  • metaMAGs Public

    Workflow for metagenome assembled genomes generation.

    microbiomedata/metaMAGs’s past year of commit activity
    Python 5 4 0 0 Updated Nov 5, 2024
  • metaT_ReadCounts Public
    microbiomedata/metaT_ReadCounts’s past year of commit activity
    WDL 0 0 0 0 Updated Nov 5, 2024
  • mg_annotation Public

    Metagenome Annotation Workflow

    microbiomedata/mg_annotation’s past year of commit activity
    WDL 4 7 2 2 Updated Nov 5, 2024
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