Release 0.8.2

metagenlab · Apr 26, 2024 · 3e02568 · 3e02568
2 parents 3af0f67 + 2955c70
commit 3e02568
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diff --git a/.github/workflows/build-docs.yml b/.github/workflows/build-docs.yml
@@ -1,8 +1,7 @@
-name: Build images / docs
+name: Docs
 on:
   push:
     branches:
-      - master
       - main
 # Cancel if a newer run is started
 concurrency:

diff --git a/.github/workflows/unit-tests.yml b/.github/workflows/unit-tests.yml
@@ -1,4 +1,4 @@
-name: Unit tests
+name: Tests
 
 on:
   push:
@@ -31,8 +31,8 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        os: [macos-latest, ubuntu-latest]
-        python-version: ["3.10", "3.12"]
+        os: [macos-13, ubuntu-latest]
+        python-version: ["3.12"]
 
     steps:
       - uses: "actions/checkout@v3"

diff --git a/mess/__main__.py b/mess/__main__.py
@@ -29,7 +29,7 @@
 mess_common_options = (
     {
         "name": "Common options",
-        "options": ["--input", "--output", "--threads", "--help"],
+        "options": ["--input", "--output", "--threads", "--taxonkit", "--help"],
     },
 )
 mess_download_options = (
@@ -61,7 +61,6 @@
             "--tool",
             "--error",
             "--mean-len",
-            "--taxonkit",
             "--bam",
             "--seed",
         ],
@@ -74,6 +73,7 @@
         "name": "pbsim3 options",
         "options": [
             "--model",
+            "--model-path",
             "--ratio",
             "--accuracy",
             "--passes",