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farchaab/README.md

Hi there, I'm Farid πŸ‘‹

Passionate Bioinformatician !

  • πŸ§‘β€πŸŽ“ Currently doing a PhD in bioinformatics @metagenlab
  • 🧬 Genomics and metagenomics enthusiast !
  • πŸ—οΈ: Nextflow and Snakemake pipeline builder !
  • πŸ₯… 2025 Goals: Learn more about rust
  • ⭐ Fun fact: Eager 🏊 and 🚴

🧰 Languages and Tools:

Linux

Bash

Python

Docker

Visual Studio Code

Nextflow

Snakemake


⚑ Recent Activity

  1. πŸš€ Published release MeSS paper v1.0 in metagenlab/benchmark-MeSS-CAMISIM
  2. πŸš€ Published release v1.0 in metagenlab/MeSS-figures
  3. πŸŽ‰ Merged PR #68 in metagenlab/zAMP
  4. πŸ’ͺ Opened PR #68 in metagenlab/zAMP
  5. πŸ”’ Closed issue #61 in metagenlab/zAMP

πŸ“Š Stats

farchaab's Stats

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  1. metagenlab/MeSS metagenlab/MeSS Public

    Snakemake pipeline for simulating shotgun metagenomic samples

    Python 19 2

  2. metagenlab/assembly_finder metagenlab/assembly_finder Public

    snakemake-powered cli to download genomes using NCBI datasets

    Python 12

  3. metagenlab/zAMP metagenlab/zAMP Public

    zAMP is a bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics

    R 8 5