changed split contigs path

metagenlab · Apr 26, 2024 · 2955c70 · 2955c70
1 parent 8412730
commit 2955c70
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/mess/workflow/rules/simulate/long_reads.smk b/mess/workflow/rules/simulate/long_reads.smk
@@ -9,7 +9,7 @@ else:
 
 rule pbsim3:
     input:
-        fa=os.path.join(dir.out.base, "split", "{fasta}_{contig}.fna"),
+        fa=os.path.join(dir.out.processing, "split", "{fasta}_{contig}.fna"),
         df=get_cov_table,
     output:
         pbsim3_out,

diff --git a/mess/workflow/rules/simulate/short_reads.smk b/mess/workflow/rules/simulate/short_reads.smk
@@ -37,7 +37,7 @@ if not PAIRED:
 
 rule art_illumina:
     input:
-        fa=os.path.join(dir.out.base, "split", "{fasta}_{contig}.fna"),
+        fa=os.path.join(dir.out.processing, "split", "{fasta}_{contig}.fna"),
         df=get_cov_table,
     output:
         sam=sam_out,