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17 Open 259 Closed
17 Open 259 Closed
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Issues list

--remove-invalid-genes output
#317 opened Dec 5, 2024 by oeco28
2
Running panaroo with pgap created gb files
#316 opened Nov 25, 2024 by erinyoung
1
Allow for deterministic MDS coordinates enhancement New feature or request
#314 opened Nov 15, 2024 by revinici
@gtonkinhill
1
Visualizing Panaroo Results
#313 opened Oct 15, 2024 by AzizHN
2
Some gene alignments in aligned_gene_sequences/ have fragmented entries
#312 opened Oct 7, 2024 by mudymudy
1
Broken error handling in multithread_codonalign_build
#310 opened Oct 1, 2024 by revinici
1
Sporadic KeyError exceptions raised during collapse_families irreproducible potential bug but has not been replicated
#307 opened Aug 21, 2024 by revinici
@gtonkinhill
4
Error with panaroo-generate-gffs enhancement New feature or request
#212 opened Nov 11, 2022 by sarapita
@gtonkinhill
5
Add colapse_paralogs to merging function enhancement New feature or request
#198 opened Sep 20, 2022 by pamelacamejom
2
panaroo-qc mash error when multiple threads selected enhancement New feature or request
#196 opened Sep 19, 2022 by alegione
1
Add a new genome to a Panaroo graph enhancement New feature or request
#153 opened Apr 8, 2022 by fabgenomics
@gtonkinhill
3
scripts/convert_refseq_to_prokka_gff.py produces only 1 chromosome output
#147 opened Mar 17, 2022 by martinastoycheva
4
Parallelise collapse_paralogs? enhancement New feature or request
#126 opened Jul 28, 2021 by johnlees
@gtonkinhill
2
mark genomes as circular enhancement New feature or request
#84 opened Oct 10, 2020 by alexweisberg
2
problem with expand_no bug Something isn't working
#83 opened Oct 5, 2020 by samlipworth
@gtonkinhill
4
iterative search for missing genes enhancement New feature or request
#58 opened May 8, 2020 by milnus
3
Add intergenic regions (optionally) enhancement New feature or request
#22 opened May 30, 2019 by johnlees
1
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